| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,608,450 – 10,608,540 |
| Length | 90 |
| Max. P | 0.572736 |
| Location | 10,608,450 – 10,608,540 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 81.17 |
| Mean single sequence MFE | -20.54 |
| Consensus MFE | -13.72 |
| Energy contribution | -14.50 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572736 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10608450 90 - 23771897 A--CUAU---AUUUUUGAAAACACACCUAAACGGAUUUAGCUACAUUGGCUAUAAUUGGUUUGGGUCGCGAUUUGAAGAUUAAUUUUUUGGUGCA .--....---..............((((((((.(((((((((.....))))).)))).)))))))).(((..(..((((.....))))..)))). ( -21.90) >DroVir_CAF1 536170 90 - 1 UAUCUAU---AUAU--UGAUCCAUGCUUAAACUGUUUUCGCCACAUUGGCUAUAAUUGGUUUGGGUCGCGAUUUGAAAAUUAGCUUCUUUGUACA .......---....--.((((((.(((......(((...(((.....)))...))).))).))))))((((...(((.......))).))))... ( -15.40) >DroGri_CAF1 493289 90 - 1 AAUCAUAUAAAUAU--CAAUCAAC---UAAACUGUUUUUGCCACAUUGGCUAUGAUUGGCUUGGGUCGCGACUUGAAGAUUAACUUCUUGGUGCA (((((((.......--.....(((---......)))...(((.....))))))))))(((....)))(((.(..((((.....))))..).))). ( -17.30) >DroSec_CAF1 490833 90 - 1 A--CUAU---AUUUUCGAAAACACAACUAAACGGAUUUAGCUACAUUGGCUAUAAUUGGUUUGGGUCGCGAUUUGAAGAUCAAUUUUUUGGUGCA .--....---..(((((((.......((((((.(((((((((.....))))).)))).)))))).......)))))))(((((....)))))... ( -19.84) >DroSim_CAF1 490924 90 - 1 A--CUAU---AUUUUCGAAAACACACUUAGACGGAUUUAGCUACAUUGGCUAUUAUUGGUUUGGGUCGCGAUUUGAAGAUCAAUUUUUUGGUGCA .--....---..(((((((.....((((((((.(((.(((((.....)))))..))).)))))))).....)))))))(((((....)))))... ( -20.50) >DroEre_CAF1 498228 90 - 1 A--CUAU---AUUUUCGGAAACAGACCUAAACGGAUUUGGCUACAUUGGCUAUAAUUGGUUUGGGUCGCGAUUUGAAGAUCAACUUUUUGGUGCA .--....---......(....).(((((((((.(((((((((.....))))).)))).)))))))))(((....((((.....))))....))). ( -28.30) >consensus A__CUAU___AUUUUCGAAAACACACCUAAACGGAUUUAGCUACAUUGGCUAUAAUUGGUUUGGGUCGCGAUUUGAAGAUCAACUUUUUGGUGCA ........................((((((((.(((((((((.....))))).)))).)))))))).(((....((((.....))))....))). (-13.72 = -14.50 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:02 2006