Locus 3603

Sequence ID 3L_DroMel_CAF1
Location 10,604,993 – 10,605,095
Length 102
Max. P 0.848841
window5617

overview

Window 7

Location 10,604,993 – 10,605,095
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 91.18
Mean single sequence MFE -30.08
Consensus MFE -23.02
Energy contribution -23.70
Covariance contribution 0.68
Combinations/Pair 1.18
Mean z-score -2.01
Structure conservation index 0.77
SVM decision value 0.78
SVM RNA-class probability 0.848841
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10604993 102 + 23771897
AAGGUGGUACUUCAUAGUUAUCGACCACCGAUAAAUCAGUGUUGCAAAAGAGACGAAAGCGGCUUUAGGCGCUCGUCUGUGUUUAUACGUGAUUUACCAACU
..(((((((((....))).....))))))(.(((((((((((.(((....((((((..(((.(....).))))))))).)))..)))).))))))).).... ( -32.50)
>DroSec_CAF1 487378 102 + 1
AAGGUGGUACUUCAUAGUUAUCGGCCACCGAUAAGUCAGUGUUGCAAAAGAGACGAAAGCGGCUUUCGGCGCUCGUCUGUGUUUAUACGUGAUUUACCAACU
.((.(((((..((((..(((((((...)))))))....((((.(((....((((((..(((.(....).))))))))).)))..))))))))..))))).)) ( -33.00)
>DroSim_CAF1 487471 101 + 1
AAGGUGGU-CUUCAUAGUUAUCGACCACCGAUAAGUCAGUGUUGCAAAAGAGACGAAAGCGGCUUUCGGCGCUCGUCUGUGUUUAUACGUGAUUUACGAACU
..((((((-(............)))))))(.(((((((((((.(((....((((((..(((.(....).))))))))).)))..)))).))))))))..... ( -34.30)
>DroEre_CAF1 494779 101 + 1
AAGGUAGUACUUCUAAGUUAUCGACUACUGAUAAAUCAGUGUUGCAAAAGAGUCGA-AGCGGCUUUAGGCGGUCCUCAGUGUUUAUACGUGAUUUAUCAACU
..(((((((((....))).....))))))(((((((((((((.(((...(((....-.((.((.....)).)).)))..)))..)))).))))))))).... ( -24.50)
>DroYak_CAF1 497183 102 + 1
AAGGUGGUACUUCAAAGUUAUCGACUACUGAUAACUCAGUGUUGCAAAAGAGUCGAAAGCGGCUUUAGGCUGUUGUCUGUGUUUAUACGUGAUUUAUCAACU
.((.(((((..(((.((((((((.....))))))))..((((.(((..(((((((....)))))))((((....)))).)))..)))).)))..))))).)) ( -26.10)
>consensus
AAGGUGGUACUUCAUAGUUAUCGACCACCGAUAAAUCAGUGUUGCAAAAGAGACGAAAGCGGCUUUAGGCGCUCGUCUGUGUUUAUACGUGAUUUACCAACU
..(((((((((....))).....))))))..(((((((((((.(((....((((((..(((.(....).))))))))).)))..)))).)))))))...... (-23.02 = -23.70 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:00 2006