Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,601,020 – 10,601,123 |
Length | 103 |
Max. P | 0.536179 |
Location | 10,601,020 – 10,601,123 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 79.49 |
Mean single sequence MFE | -20.84 |
Consensus MFE | -15.27 |
Energy contribution | -15.17 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.32 |
Mean z-score | -1.04 |
Structure conservation index | 0.73 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536179 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10601020 103 + 23771897 ----------AUUAACUUUAUAUU-UUUCUAUCAGUUGUGGAGUGCAUUUUUCUAUACAUCGUUCAACGGUUCUACGUGACUUUGGCCUUUUGCCAAGCCUGUCAUAAGGCUAU ----------....((((((((..-...........)))))))).................(((..(((......))))))..((((.....))))(((((......))))).. ( -19.02) >DroSec_CAF1 483389 103 + 1 ----------AUUAACUAUAUAUU-UUUCUAUCAGUUGUGGAGUGCAUUUUUCUGUACAUCGUUCAGCGGUUCUACGUGACUUUGGCCUUUUGCCAAGCCUGUCAUAAAGCUAU ----------..............-........((((((((((((((......)))))((((.....)))))))))(((((((((((.....))))))...)))))..)))).. ( -23.70) >DroSim_CAF1 483447 103 + 1 ----------AUUAACUAUAUAUU-UUUCUAUCAGUUGUGGAGUGCAUUUUUCUGUACAUCGUUCAGCGGUUCUACGUGACUUUGGCCUUUUGCCAAGCCUGUCAUAAAGCUAU ----------..............-........((((((((((((((......)))))((((.....)))))))))(((((((((((.....))))))...)))))..)))).. ( -23.70) >DroEre_CAF1 490725 104 + 1 ----------AUUAGAUUGAUUUUAUUGCCUUCAGUUGUGGAGUGCAUUUUUCUGUACAUCGUUCAACGCUUUUACGUGACUUUGGCUUUUUGUCAAGCGUGUCAUAAAGCUUU ----------........................((((..(((((((......))))).))...))))(((((...(((((((((((.....))))))...))))))))))... ( -21.90) >DroYak_CAF1 493153 104 + 1 ----------AUUAAAUUGAUUUUAUUACUUUCAGUUGUGGAGUGCGCUUUUCUGUACAUCGUUCAACGGUUUUACGUGACUUUGGCCUUUUGUCAAGCCUGUCAUAAUGCCAA ----------........................((((..(((((((......))))).))...))))(((.....(((((...(((..........))).)))))...))).. ( -19.90) >DroAna_CAF1 473521 112 + 1 CAUUUAAACCAUUCAAUAAUUAUU-UAUUUAUUAGCUGUGGAAUCCAUGUUCUUGUAUAUUAUUUACCGCUUCUAUGUGACUAUGGACUUUUGUCAAAACUGUCAAA-GGCCCA ........((((..(((((.....-...)))))....))))..((((((.....(((.......)))(((......)))..))))))((((((.((....)).))))-)).... ( -16.80) >consensus __________AUUAAAUAUAUAUU_UUUCUAUCAGUUGUGGAGUGCAUUUUUCUGUACAUCGUUCAACGGUUCUACGUGACUUUGGCCUUUUGCCAAGCCUGUCAUAAAGCUAU ..................................(((((((((((((......)))))((((.....)))))))))(((((((((((.....))))))...)))))..)))... (-15.27 = -15.17 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:59 2006