Locus 36

Sequence ID 3L_DroMel_CAF1
Location 129,625 – 129,715
Length 90
Max. P 0.624963
window43

overview

Window 3

Location 129,625 – 129,715
Length 90
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 68.56
Mean single sequence MFE -18.48
Consensus MFE -13.18
Energy contribution -13.66
Covariance contribution 0.48
Combinations/Pair 1.18
Mean z-score -0.82
Structure conservation index 0.71
SVM decision value 0.19
SVM RNA-class probability 0.624963
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 129625 90 + 23771897
AGUAUUAAUAUUGGAUUUGAAUGCAGCGAUGCGUUUUAC-GCAUUUCAAAUCCGAAACUCGCUUAGAUCACACGACGUAACUUU-----------------------------AUAAGAU
..........((((((((((.......((((((.....)-))))))))))))))).(((((...........))).))......-----------------------------....... ( -17.71)
>DroSec_CAF1 3929 91 + 1
AGUAUUAAUAUUGGAUUUGAAUGUAACGAUUCGUUUUUCUGCAUUUCAAAUCCGAAAAUCACUUAGAUGAUAUGACGUAACUUA-----------------------------AUAAAAU
..((((((..(((((((((((((((..((........)))))).)))))))))))..((((......))))..........)))-----------------------------))).... ( -17.20)
>DroSim_CAF1 4501 91 + 1
AGUAUUAAUAUUGGAUUUGAAUGUAACGAUUCGUUUUUCUGCAUUUCAAAUCCGAAAAUCGCUUAGAUAAUAUGACGUAACUUA-----------------------------AUAAAAU
..((((((..(((((((((((((((..((........)))))).)))))))))))..(((.....))).............)))-----------------------------))).... ( -17.00)
>DroEre_CAF1 4873 100 + 1
AGUAUUAAUAUUGGAUUUGAAUGCAACGAUGAAUUUCUCCGCACUGCAA-UCCGAAUGUCGUUUUGAUUGAAUUGCGCUGUUUAA-------------------AAACUUUCGUUCAUAU
....................(((.(((((..........((((...(((-((.((((...)))).)))))...))))..(((...-------------------.)))..)))))))).. ( -14.70)
>DroYak_CAF1 4795 120 + 1
AGUAUUAAUAUUGGAUUUGAAUGCAACGAUGAAGUUUUCUGCACUGCAAGUCCGAAUGUCGUUAUGAUCGAAUUGCGCGUUUUGAAAUCUUUCGUUCGUAUGACAAAACCCCAAAAAAAU
..........(((((((((..((((..((........))))))...))))))))).((((((.((((.((((..................)))).))))))))))............... ( -25.77)
>consensus
AGUAUUAAUAUUGGAUUUGAAUGCAACGAUGCGUUUUUCUGCAUUUCAAAUCCGAAAAUCGCUUAGAUCAAAUGACGUAACUUA_____________________________AUAAAAU
..........(((((((((((((((..((......))..)))))).)))))))))................................................................. (-13.18 = -13.66 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:24 2006