Locus 3599

Sequence ID 3L_DroMel_CAF1
Location 10,593,512 – 10,593,611
Length 99
Max. P 0.643895
window5611

overview

Window 1

Location 10,593,512 – 10,593,611
Length 99
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 79.40
Mean single sequence MFE -18.68
Consensus MFE -12.32
Energy contribution -12.52
Covariance contribution 0.19
Combinations/Pair 1.13
Mean z-score -1.41
Structure conservation index 0.66
SVM decision value 0.23
SVM RNA-class probability 0.643895
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10593512 99 - 23771897
AUGCCAGUUACUUAUGGCUGUUAUGUGCAUUAUCAAUAUGCAUUGUACGGCUCGCCCUGCCGCUUUAUAUUUUGCCAGCGUUUUUCUUCUACUUUUC--AU
..((((........)))).((...((((((.......))))))...))(((.......)))(((............)))..................--.. ( -18.10)
>DroVir_CAF1 518799 97 - 1
ACGCCAGUUACUUAUGGCUGUUCUGUGCAUUACCAAUAUGCAUUGUACGGCAACGCUCUAGGCUUUAUAUUUUAUCAAUGUUAUACUACCUCACCC----A
..(((((.........(((((...((((((.......))))))...)))))......)).))).................................----. ( -18.06)
>DroPse_CAF1 528925 99 - 1
AUGCCAGUUACUUAUGGCUGUUAUGUGCAUUAUCAAUAUGCAUUGUACAGCUCCUCUUGCCGCUUUAUAUUUUCCUAGCGUUUUCCUUCUUCUCCGC--AG
.(((...........((((((...((((((.......))))))...))))))........((((............))))...............))--). ( -20.20)
>DroGri_CAF1 479590 99 - 1
ACGCCAGUUACUUAUGGCUGCUGUGUGCAUUAUCAAUAUGCAUUGCAGUGUUACGCUCUACGCUUUAUAUUUCACCAACGAUUUCAUAUCCCACCUU--GU
..((((........))))(((...((((((.......)))))).)))((((........))))..................................--.. ( -17.40)
>DroAna_CAF1 466325 101 - 1
AUGCCAGUUACUUAUGGCUGUUAUGUGCAUUAUCAAUAUGCAUUGUACGGCUCCUCCUGCCGCUUUAUACUUUCCCAGCGUUUUUCCCCCACUUUUCCAAA
..((((........)))).((...((((((.......))))))...))(((.......)))(((............)))...................... ( -18.10)
>DroPer_CAF1 538465 99 - 1
AUGCCAGUUACUUAUGGCUGUUAUGUGCAUUAUCAAUAUGCAUUGUACAGCUCCUCUUGCCGCUUUAUAUUUUCCUAGCGUUUUCCUUCUUCUCCGC--AG
.(((...........((((((...((((((.......))))))...))))))........((((............))))...............))--). ( -20.20)
>consensus
AUGCCAGUUACUUAUGGCUGUUAUGUGCAUUAUCAAUAUGCAUUGUACGGCUCCUCUUGCCGCUUUAUAUUUUCCCAGCGUUUUCCUUCCUCUCCUC__AA
..((((........))(((((...((((((.......))))))...)))))..........))...................................... (-12.32 = -12.52 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:55 2006