Locus 3598

Sequence ID 3L_DroMel_CAF1
Location 10,586,481 – 10,586,573
Length 92
Max. P 0.790784
window5610

overview

Window 0

Location 10,586,481 – 10,586,573
Length 92
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 79.34
Mean single sequence MFE -27.77
Consensus MFE -17.95
Energy contribution -18.53
Covariance contribution 0.58
Combinations/Pair 1.11
Mean z-score -1.72
Structure conservation index 0.65
SVM decision value 0.59
SVM RNA-class probability 0.790784
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10586481 92 + 23771897
AUUUCGCCGCACGAUUGGUAUGUCAUGUCAUGUCAAUCUUU-------CCGGAAUAUUCUCUUCCCGGCG------CCGGGAUUCGUGACCCUUUAGG-------CCAGAGA
.((((((((...(((((..(((......)))..)))))...-------..((((.......))))))))(------(((((........)))....))-------)..)))) ( -26.50)
>DroSec_CAF1 466034 92 + 1
AUUUCGCCGCACGAUUGGUAUGUCAUGUCAUGUCAAUCUUU-------CCGGAAUAUUCUCUUCCCGGCG------CCGGGAUUCGUGUCCCUUUAGC-------CCAGCGA
...((((.((..(((((..(((......)))..)))))...-------..((.((((.....(((((...------.)))))...)))).))....))-------...)))) ( -27.60)
>DroSim_CAF1 468627 92 + 1
AUUUCGCCGCACGAUUGGUAUGUCAUGUCAUGUCAAUCUUU-------CCGGAAUAUUCUCUUCCCGGCG------CCGGGAUUCGUGGCCCUUUAGG-------CCAGCGA
......(((...(((((..(((......)))..)))))...-------.)))..........(((((...------.))))).((((((((.....))-------))).))) ( -31.70)
>DroEre_CAF1 475432 96 + 1
AUUUCGCCGCACGAUUGGUAUGUCAUGUCAUGUCAAUCUUU-------CCGGAAUACUCCCAUCCCGGCG--AUUCCCGGGAUUCGUGGUCCUUUAGG-------CCAGAGA
......(((...(((((..(((......)))..)))))...-------.)))....(((..(((((((..--....)))))))...(((((.....))-------)))))). ( -31.10)
>DroWil_CAF1 747372 105 + 1
AUUUUGCCGCACGAUUGGCAUGU-----CAUGUCAAUCUUUGUAUGUGCCGCAACCACCCCAUCUGGGCCCCCUUCCCUCCCCUCCUUGCCCUUUACCCUUCUCGGC--AGU
...((((.(((((((((((((..-----.))))))))).......)))).))))....(((....)))..................(((((.............)))--)). ( -24.03)
>DroYak_CAF1 477497 92 + 1
AUUUCGCCGCACGAUUGGUAUGUCAUGUCAUGUCAAUCUUU-------CCGGAAUAUUCCCAUCCCGGCG------CCGGGAUUCGUAACCCUUUAGG-------CCAGUGA
.....(((....(((((..(((......)))..)))))...-------..((..(((....((((((...------.))))))..)))..))....))-------)...... ( -25.70)
>consensus
AUUUCGCCGCACGAUUGGUAUGUCAUGUCAUGUCAAUCUUU_______CCGGAAUAUUCCCAUCCCGGCG______CCGGGAUUCGUGGCCCUUUAGG_______CCAGAGA
.........(((((((((((((......))))))))))........................((((((........))))))...)))........................ (-17.95 = -18.53 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:54 2006