Locus 3592

Sequence ID 3L_DroMel_CAF1
Location 10,578,214 – 10,578,313
Length 99
Max. P 0.807002
window5598

overview

Window 8

Location 10,578,214 – 10,578,313
Length 99
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 78.62
Mean single sequence MFE -27.56
Consensus MFE -12.79
Energy contribution -15.17
Covariance contribution 2.38
Combinations/Pair 1.12
Mean z-score -2.41
Structure conservation index 0.46
SVM decision value 0.64
SVM RNA-class probability 0.807002
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10578214 99 - 23771897
CUAGCUGCUACGGCUUAAUUCCCUUAAAGAAACCUGGCCGCAU-------GCCCUCAGCUUGUGGCCUUCCAUUUAGUUACUGGCCUGGUUCUGCAAUAUUCAUGC---
...((.((((.((((........(((((.......(((((((.-------((.....)).))))))).....))))).....))))))))...))...........--- ( -25.82)
>DroSec_CAF1 457641 98 - 1
CUAGCUGCUACGGCUUAAUUCCCUAAAAGG-ACCUGGCCGCAU-------GCCCUCAGCUUGUGGCCUUCCAUUUAGUUACUGGCCUGGUCCUGCAAUAUUCAUGC---
...((.((((.((((.......(((((.((-(...(((((((.-------((.....)).))))))).))).))))).....))))))))...))...........--- ( -32.40)
>DroSim_CAF1 460473 98 - 1
CUAGCUGCUACGGCUUAAUUCCCUAAAAGG-ACCUGGCCGCAU-------GCCCUCAGCUUGUGGCCUUCCAUUUAGUUACUGGCCUGGUCCUGCAAUAUUCAUGC---
...((.((((.((((.......(((((.((-(...(((((((.-------((.....)).))))))).))).))))).....))))))))...))...........--- ( -32.40)
>DroEre_CAF1 466951 77 - 1
CUAGCUGCUACGGCUUAAUUCCCUGAAAGG-ACCUGG----------------------------CCUUCCAUUUAGUCACUGGCCUGGUCCUGCAAUAUUCAUGC---
...((.((....)).............(((-(((.((----------------------------((...............)))).))))))))...........--- ( -23.66)
>DroYak_CAF1 468705 98 - 1
CUAGCUGCUACGGCUUAAUUCCCUAAAAGG-ACCUGGCCGCAU-------GCCCUCAGCUUGUGGCCUUCCAUUUAGUUACUGGCCCGUUCCUGCAAUAUUCAUGC---
...((.(..((((((.......(((((.((-(...(((((((.-------((.....)).))))))).))).))))).....)).))))..).))...........--- ( -30.60)
>DroPer_CAF1 524001 106 - 1
AUAGCUGCUUUGGGUUAAUUCCCUCCGAGG-GCUACUCCUCUUUUUUUGGUCUUUCAGCCUUUGAAUUUCCAUUAAGUUACUCGCCUGUU--UACAAUAUUCAUGGCCG
.(((((.....(((......)))..(((((-(((...((.........))......))))))))...........)))))...(((((..--((...))..)).))).. ( -20.50)
>consensus
CUAGCUGCUACGGCUUAAUUCCCUAAAAGG_ACCUGGCCGCAU_______GCCCUCAGCUUGUGGCCUUCCAUUUAGUUACUGGCCUGGUCCUGCAAUAUUCAUGC___
...((.((((.((((.......(((((.((.....(((((((..................)))))))..)).))))).....))))))))...)).............. (-12.79 = -15.17 +   2.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:43 2006