Locus 3591

Sequence ID 3L_DroMel_CAF1
Location 10,575,728 – 10,575,832
Length 104
Max. P 0.851636
window5597

overview

Window 7

Location 10,575,728 – 10,575,832
Length 104
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 77.05
Mean single sequence MFE -25.56
Consensus MFE -12.90
Energy contribution -13.10
Covariance contribution 0.20
Combinations/Pair 1.19
Mean z-score -2.05
Structure conservation index 0.50
SVM decision value 0.79
SVM RNA-class probability 0.851636
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10575728 104 - 23771897
AGGCGUUUGUCGUGGCACUCGGAGAAAUACAAACUAAAGUGGCGAUUGUGCUGCGGAAACAGCGAGCAAAUUGCAUUUAAUCAAUGC------AAUGCUUAAAUAAAUAG
..((((((.(((..((((.....(...(((........))).)....))))..))))))).))(((((..(((((((.....)))))------))))))).......... ( -28.60)
>DroSec_CAF1 455120 96 - 1
AGGCGUUUGUCAGGGCAUUUGGAGAAAUACAAACUAAAGUGGC--------AGCGAAAACAGCAAGCAAAUUGCAUUUAAUCAAUGC------AAUGCUUAAAUAAAUAG
..((.(((((...(.(((((..((.........)).))))).)--------.)))))....))(((((..(((((((.....)))))------))))))).......... ( -19.30)
>DroSim_CAF1 457913 84 - 1
AGGCGUUUGUCAGGGCACUCGGAGAAAUACAAACUAAAGUGGC--------------------AAGCAAAUUGCAUUAAAUAAAUGC------AAUGCUUAUAUAAAUAG
((((((((((((((....))(........).........))))--------------------))))..((((((((.....)))))------))))))).......... ( -18.20)
>DroEre_CAF1 464394 108 - 1
AGGCGUUUGUCAGGGCACUCGGAGAAAUUCAAGCUAAAGUGGCGAUUGUGCUGGGGGAACGGCCAGCAAAUUGCACUUAA--AGUGCACCAGAGGGGCUUAAAUAAAUAG
....((((.((.(((((((.(((....)))......(((((.(((((.((((((........))))))))))))))))..--))))).)).)).))))............ ( -34.90)
>DroYak_CAF1 466048 108 - 1
AGGCGUUUGUCAGGGCACUCGGAGAAAUACAAACUAAAGUGGCGAUUGUGCUGCGGCAACAGCGAGCAAAUUGCAUUUAA--AGUGAGUCAAAAAGGCCUAAAUACAUAA
((((.(((.......((((..(((...(((........)))((((((.(((((((....).)).)))))))))).)))..--))))......))).)))).......... ( -26.82)
>consensus
AGGCGUUUGUCAGGGCACUCGGAGAAAUACAAACUAAAGUGGCGAUUGUGCUGCGGAAACAGCAAGCAAAUUGCAUUUAAU_AAUGC______AAUGCUUAAAUAAAUAG
((((((((((...(.((((...((.........))..)))).)......((((......))))..)))))).(((((.....))))).........)))).......... (-12.90 = -13.10 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:42 2006