Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,043,895 – 1,044,026 |
Length | 131 |
Max. P | 0.931470 |
Location | 1,043,895 – 1,043,987 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 81.72 |
Mean single sequence MFE | -30.40 |
Consensus MFE | -23.19 |
Energy contribution | -23.50 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.12 |
Mean z-score | -2.80 |
Structure conservation index | 0.76 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931470 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1043895 92 + 23771897 GGCGACAC-UGGAACGACCCCAUCCUGCAUC---------------------CGGAAUCGUGCAACUGCAUCCUGCAGCUGCAACGUUUCGCAUUUGCGCAUUGCAUGAUUCAA .(((....-(((.......)))...)))...---------------------..(((((((((((.(((.....((((.(((........))).)))))))))))))))))).. ( -27.80) >DroSec_CAF1 18564 88 + 1 GGCGACAC-UGGAA----CCCAUCCUGCAUG---------------------CCGAAUCGUGCAACUGCAUCCUGCAGCUGCAACGUUUCGCAUUUGCGCAUUGCAUGAUUCAA ((((....-.(((.----....)))....))---------------------))(((((((((((.(((.....((((.(((........))).)))))))))))))))))).. ( -32.00) >DroSim_CAF1 19325 88 + 1 GGCGACAC-UGGAA----CCCAUCCUGCAUC---------------------CCGAAUCGUGCAACUGCAUCCUGCAGCUGCAACGUUUCGCAUUUGCGCAUUGCAUGAUUCAA ((.((..(-.(((.----....))).)..))---------------------))(((((((((((.(((.....((((.(((........))).)))))))))))))))))).. ( -30.00) >DroEre_CAF1 21670 88 + 1 GGCGACAC-UGGAG----CCCAUCCUGCAUC---------------------CCGAAUCCUGCAACUGCAUCCUGCAGCUGCAACGUUUCGCAUUUGCGCAUUGCAUGAUUCAA ((.((..(-.(((.----....))).)..))---------------------))(((((.(((((.(((.....((((.(((........))).)))))))))))).))))).. ( -26.90) >DroYak_CAF1 19358 109 + 1 GGCGACAC-UGGAA----CCCAUCCUGCAUCCUGCAUCCUGCAUCCCGAGUCCCGAAUCGUGCAACUGCAUCCUGCAGCUGCAACGUUUCGCAUUUGCGCAUUGCAUGAUUCAA ((.(((.(-.(((.----..((...(((.....)))...))..))).).)))))(((((((((((.(((.....((((.(((........))).)))))))))))))))))).. ( -36.10) >DroAna_CAF1 17205 79 + 1 AGAGGCAGUUGCAG----CAGAUGCU----------------------------GA--GAUGCAGAUGCAUC-UACAGCUGCAACGUUUCGCAUUUGCGCAUUGCAUGAUUCAA ....(((((.((.(----((((((((----------------------------((--(((((....)))))-).)))).((........)))))))))))))))......... ( -29.60) >consensus GGCGACAC_UGGAA____CCCAUCCUGCAUC_____________________CCGAAUCGUGCAACUGCAUCCUGCAGCUGCAACGUUUCGCAUUUGCGCAUUGCAUGAUUCAA ..........(((.........))).............................(((((((((((.(((.....((((.(((........))).)))))))))))))))))).. (-23.19 = -23.50 + 0.31)
Location | 1,043,895 – 1,043,987 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 81.72 |
Mean single sequence MFE | -33.50 |
Consensus MFE | -23.34 |
Energy contribution | -23.45 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.15 |
Mean z-score | -2.41 |
Structure conservation index | 0.70 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864619 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1043895 92 - 23771897 UUGAAUCAUGCAAUGCGCAAAUGCGAAACGUUGCAGCUGCAGGAUGCAGUUGCACGAUUCCG---------------------GAUGCAGGAUGGGGUCGUUCCA-GUGUCGCC ........(((.....)))...((((.((...((((((((.....))))))))(((((((((---------------------.........)))))))))....-)).)))). ( -32.40) >DroSec_CAF1 18564 88 - 1 UUGAAUCAUGCAAUGCGCAAAUGCGAAACGUUGCAGCUGCAGGAUGCAGUUGCACGAUUCGG---------------------CAUGCAGGAUGGG----UUCCA-GUGUCGCC ..(((((.((((.(((((....))(((.(((.((((((((.....))))))))))).))).)---------------------)))))).....))----)))..-........ ( -33.10) >DroSim_CAF1 19325 88 - 1 UUGAAUCAUGCAAUGCGCAAAUGCGAAACGUUGCAGCUGCAGGAUGCAGUUGCACGAUUCGG---------------------GAUGCAGGAUGGG----UUCCA-GUGUCGCC ..(((((........(((....)))....((.((((((((.....)))))))))))))))((---------------------(((((.(((....----.))).-))))).)) ( -33.30) >DroEre_CAF1 21670 88 - 1 UUGAAUCAUGCAAUGCGCAAAUGCGAAACGUUGCAGCUGCAGGAUGCAGUUGCAGGAUUCGG---------------------GAUGCAGGAUGGG----CUCCA-GUGUCGCC ..(((((........(((....))).....((((((((((.....)))))))))))))))((---------------------(((((.(((....----.))).-))))).)) ( -32.90) >DroYak_CAF1 19358 109 - 1 UUGAAUCAUGCAAUGCGCAAAUGCGAAACGUUGCAGCUGCAGGAUGCAGUUGCACGAUUCGGGACUCGGGAUGCAGGAUGCAGGAUGCAGGAUGGG----UUCCA-GUGUCGCC ..(((((........(((....)))....((.((((((((.....)))))))))))))))(((((.((((((.((...(((.....)))...)).)----)))).-).))).)) ( -41.80) >DroAna_CAF1 17205 79 - 1 UUGAAUCAUGCAAUGCGCAAAUGCGAAACGUUGCAGCUGUA-GAUGCAUCUGCAUC--UC----------------------------AGCAUCUG----CUGCAACUGCCUCU .........(((...(((....)))....((((((((((((-(((((....)))))--).----------------------------.)))...)----)))))))))).... ( -27.50) >consensus UUGAAUCAUGCAAUGCGCAAAUGCGAAACGUUGCAGCUGCAGGAUGCAGUUGCACGAUUCGG_____________________GAUGCAGGAUGGG____UUCCA_GUGUCGCC ..(((((........(((....)))......(((((((((.....))))))))).))))).............................(((.........))).......... (-23.34 = -23.45 + 0.11)
Location | 1,043,925 – 1,044,026 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 80.20 |
Mean single sequence MFE | -25.79 |
Consensus MFE | -13.29 |
Energy contribution | -13.10 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.09 |
Mean z-score | -2.19 |
Structure conservation index | 0.52 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633909 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1043925 101 + 23771897 ------------CGGAAUCGUGC---AACUGCAUCCUGCAGCUGCAACGUUUCGCAUUUGCGCAUUGCAUGAUUCAAUAAUGAUUGAAUUAAUUGCGUUAAUAACUGACACUAGCC ------------.((((.(((((---(.((((.....)))).))).)))))))((....))((...((((((((((((....)))))))))..)))((((.....))))....)). ( -29.20) >DroVir_CAF1 28814 87 + 1 -----------------UCGUGUUUGAAGUGCG--C----------CCAUUUUGCAUUUGCGCAUUGCAUGAUUCAAUAAUGAUUGAAUUAAUUGCGUUAAUAACUGACACUAGCC -----------------..(((((.(.((((((--(----------.............)))))))((((((((((((....)))))))))..)))........).)))))..... ( -22.22) >DroGri_CAF1 23874 89 + 1 -----------------UCGUGCUUGAAGUGCGUAC----------CCAUUUUGCAUUUGCGCAUUGCAUGAUUCAAUAAUGAUUGAAUUAAUUGCGUUAAUAACUGACACUAGCA -----------------...((((.(.((((((((.----------............))))))))((((((((((((....)))))))))..)))((((.....)))).).)))) ( -20.72) >DroEre_CAF1 21696 101 + 1 ------------CCGAAUCCUGC---AACUGCAUCCUGCAGCUGCAACGUUUCGCAUUUGCGCAUUGCAUGAUUCAAUAAUGAUUGAAUUAAUUGCGUUAAUAACUGACACUAGCC ------------..(((...(((---(.((((.....)))).))))....)))((....))((...((((((((((((....)))))))))..)))((((.....))))....)). ( -26.20) >DroYak_CAF1 19393 113 + 1 GCAUCCCGAGUCCCGAAUCGUGC---AACUGCAUCCUGCAGCUGCAACGUUUCGCAUUUGCGCAUUGCAUGAUUCAAUAAUGAUUGAAUUAAUUGCGUUAAUAACUGACACUAGCC .........(((.((((.(((((---(.((((.....)))).))).))).)))).(((.(((((.....(((((((((....)))))))))..))))).)))....)))....... ( -31.80) >DroAna_CAF1 17227 96 + 1 --------------GA--GAUGC---AGAUGCAUC-UACAGCUGCAACGUUUCGCAUUUGCGCAUUGCAUGAUUCAAUAAUGAUUGAAUUAAUUGCGUUAAUAACUGACACUAGGC --------------.(--(((((---....)))))-)...(((((((.((..(((....)))....)).(((((((((....))))))))).))))((((.....))))....))) ( -24.60) >consensus ______________GA_UCGUGC___AACUGCAUCCUGCAGCUGCAACGUUUCGCAUUUGCGCAUUGCAUGAUUCAAUAAUGAUUGAAUUAAUUGCGUUAAUAACUGACACUAGCC ....................(((.......)))....................((....))((...((((((((((((....)))))))))..)))((((.....))))....)). (-13.29 = -13.10 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:02 2006