Locus 3589

Sequence ID	3L_DroMel_CAF1
Location	10,566,618 – 10,566,721
Length	103
Max. P	0.918865

overview

Window 5

Location	10,566,618 – 10,566,721
Length	103
Sequences	4
Columns	109
Reading direction	reverse
Mean pairwise identity	79.09
Mean single sequence MFE	-15.82
Consensus MFE	-12.38
Energy contribution	-12.75
Covariance contribution	0.38
Combinations/Pair	1.12
Mean z-score	-1.90
Structure conservation index	0.78
SVM decision value	1.12
SVM RNA-class probability	0.918865
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10566618 103 - 23771897
--UUCAUUAAAUUUAAUUACGUCUUUAUUUUGUAAUUCACUUGAAAGCUACAUUUAAUUUGGCAAUUGUUGGGUUCGAUUUAGUUUUCAUUAUUG----UUUUUCCCUC
--............(((((((.........)))))))....(((((((((.(((.((((..((....))..)))).))).)))))))))......----.......... ( -18.80)
>DroVir_CAF1 494252 84 - 1
UU-UUGUU-ACUUUAAUUAAGUGUCUAU--------UCACUUGAAAGCUACAUUUAAUUUGGCAAUUGUUGGGUUUGAAUUGAUUUGUUUCAUU---------------
..-.(((.-.(((...(((((((.....--------.))))))))))..)))((.((((..((....))..)))).))..(((......)))..--------------- ( -13.20)
>DroSim_CAF1 448844 103 - 1
--UUCAUUAAAUUUAAUUACGUCUUUAUUUUAUAAUUCACUUGAAAGCUACAUUUAAUUUGGCAAUUGUUGGGUUCGAUUUAGUUUUCUUUAUUG----UUUUUCCCUC
--........................................((((((((.(((.((((..((....))..)))).))).)))))))).......----.......... ( -15.30)
>DroEre_CAF1 455350 107 - 1
--UUCAUUAAAUUUAAUUACGUCUUUAUUUUAAAAUUCACUUGAAAGCUACAUUUAAUUUGGCAAUUGUUGGGUUCGAUUUAGUUUUCUUUAUUGUUUUUCCUUCCCUU
--.............................(((((......((((((((.(((.((((..((....))..)))).))).))))))))......))))).......... ( -16.00)
>consensus
__UUCAUUAAAUUUAAUUACGUCUUUAUUUUAUAAUUCACUUGAAAGCUACAUUUAAUUUGGCAAUUGUUGGGUUCGAUUUAGUUUUCUUUAUUG____UUUUUCCCUC
..........................................((((((((.(((.((((..((....))..)))).))).))))))))..................... (-12.38 = -12.75 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:40 2006