Locus 3587

Sequence ID 3L_DroMel_CAF1
Location 10,551,202 – 10,551,293
Length 91
Max. P 0.919695
window5592

overview

Window 2

Location 10,551,202 – 10,551,293
Length 91
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 78.90
Mean single sequence MFE -21.13
Consensus MFE -15.17
Energy contribution -15.17
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.72
SVM decision value 1.13
SVM RNA-class probability 0.919695
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10551202 91 + 23771897
UUGU---UUUCUCUCAAACA------C-C-C-----CACACAGUUGUACUGACCAAAGAUGGUGCCAUACCGGCCCCAGCUCUAGGUGAGCCAA--AUCCAAAUCC---AAC
(((.---.((..(((.....------.-.-.-----....(((.....)))(((..((.(((.(((.....))).))).))...))))))...)--)..)))....---... ( -16.70)
>DroVir_CAF1 478839 92 + 1
UUGU---UUUCUCUUACACA------C-CAC-----CACACAGUUGUACUGACCAAAGACGGUGCCCUACCGGCUCCAGCUCUAGGUGAGCAAA--UUAGAGAACA---AAU
((((---(((((........------.-...-----....(((.....))).........((.(((.....))).)).((((.....))))...--..))))))))---).. ( -23.50)
>DroPse_CAF1 464859 95 + 1
CUCUCUCUCUCUCUGAAACACUGUUUC-C-C-----CACACAGUCGUACUGACCAAAGAUGGUGCCAUACCGGCCCCAGCUCUAGGUGAGCC-------CAAAACC---CAC
.................(((((((...-.-.-----...))))).)).((.(((..((.(((.(((.....))).))).))...))).))..-------.......---... ( -18.50)
>DroGri_CAF1 441924 89 + 1
UUGU---UUUCUCUCACACA------C---------CACACAGUUGUACUGACCAAAGACGGUGCCAUACCGGCUCCAGCUCUAGGUGAGCAAA--UCAGAGAACA---AAU
((((---(((((........------.---------....(((.....)))......((.((.(((.....))).)).((((.....))))...--))))))))))---).. ( -24.60)
>DroMoj_CAF1 549512 98 + 1
UUGU---UUUCUCUCACACA------ACCAACAACACACACAGUUGUACUGACCAAAGAUGGUGCCCUACCGGCUCCAGCUCUAGGUGAGCGAA--CCAGAGAACA---AAU
((((---(((((.((.....------....(((((.......))))).((.(((..((.(((.(((.....))).))).))...))).)).)).--..))))))))---).. ( -26.60)
>DroAna_CAF1 423927 96 + 1
UUGU---UUUCUCUCAAAAA------C-C-C-----AACACAGUUGUACUGACCAAAGACGGUGCCAUACCGGCCCCCGCUCUAGGUGAGCCAAAAAUCCAAAUCCCUAAAC
...(---(((..(((.....------.-.-.-----....(((.....)))(((..((((((.(((.....)))..))).))).))))))..))))................ ( -16.90)
>consensus
UUGU___UUUCUCUCAAACA______C_C_C_____CACACAGUUGUACUGACCAAAGACGGUGCCAUACCGGCCCCAGCUCUAGGUGAGCCAA__AUACAAAACA___AAC
........................................(((.....))).........((.(((.....))).)).((((.....))))..................... (-15.17 = -15.17 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:37 2006