| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,547,757 – 10,547,853 |
| Length | 96 |
| Max. P | 0.569149 |
| Location | 10,547,757 – 10,547,853 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 80.68 |
| Mean single sequence MFE | -38.68 |
| Consensus MFE | -26.43 |
| Energy contribution | -25.93 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.569149 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10547757 96 - 23771897 CUGUUGGUGCACCACCAUUGGCAAUGCUGUCCAAUCCGGUGGUGGGCAAAAGUCCAAC---GCCACUGCUGCUGGUGGCCGCCAAUGUGCCGGAAGCUA ..(((((((.(((((((((((((....)).)))))..))))))((((....))))...---((((((......)))))))))))))..(.(....)).. ( -36.80) >DroSim_CAF1 435994 96 - 1 CUGCUGGUGCACCACCAUUGGCAAUGCUAUCCAAUCCGGUGGUGGGCAGAAGGCCAAC---GCCACUGCUGCUGGUGGCCGCCAAUGUGCCGGAAGCUA ((.((((..((((((((((((...((.....))..))))))))))......(((....---((((((......)))))).)))..))..)))).))... ( -40.20) >DroEre_CAF1 436338 96 - 1 CUGCUGGUGCGCCACCAUUGGCAAUGCUAUCCAAUCCGGUGGUGGGCAAGAGGCCAAC---GCCACUGCUGCUGGUGGCCGCCAAUGUGCCGGAAGCUA ((.((((..((((((((((((...((.....))..)))))))).)))....(((....---((((((......)))))).)))...)..)))).))... ( -39.30) >DroYak_CAF1 437189 96 - 1 CGGCUGGUGCACCACCAUUGGCAAUGCUAUCCAAACCGGUGGUGGGCAAGAGGCCAAC---GCCACUGCUGCUGGUGGCCGCCAAUGUGCCGGAAGCUA (((((((....))).(((((((...((((.(((.(.(((((((((((.....)))..)---))))))).)..))))))).))))))).))))....... ( -41.70) >DroMoj_CAF1 546350 89 - 1 ----------GCCGCAGUUGGCAAUACUAUCCAGACCGGCUGUGGGCAGUAUUCCUGACGAGACGCUGCUGCUGGUGGCGGCCAAUGCGCCCGAAGCUA ----------.(((((((((((...........).))))))))))((((..(..(....)..)..)))).(((...((((.......))))...))).. ( -31.70) >DroAna_CAF1 420763 90 - 1 ----CG--GCAUUGCCAUUAGCGAUGGUGUCCAGUCCGGUGGUGGGCAGGAGGCCAAC---ACCGCUGCUGCUGGUGGCGGCCAAAGCGCCGGCAGCUA ----.(--((...)))...((((.((((.(((.(((((....))))).))).))))..---..))))((((((((((.(.......))))))))))).. ( -42.40) >consensus CUGCUGGUGCACCACCAUUGGCAAUGCUAUCCAAUCCGGUGGUGGGCAAGAGGCCAAC___GCCACUGCUGCUGGUGGCCGCCAAUGUGCCGGAAGCUA ...........((((((((((...((.....))..))))))))))(((...(((.......)))..))).(((..((((.((....))))))..))).. (-26.43 = -25.93 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:36 2006