Locus 3585

Sequence ID 3L_DroMel_CAF1
Location 10,546,984 – 10,547,079
Length 95
Max. P 0.713574
window5590

overview

Window 0

Location 10,546,984 – 10,547,079
Length 95
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 81.72
Mean single sequence MFE -27.05
Consensus MFE -17.02
Energy contribution -18.30
Covariance contribution 1.28
Combinations/Pair 1.12
Mean z-score -2.08
Structure conservation index 0.63
SVM decision value 0.38
SVM RNA-class probability 0.713574
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10546984 95 - 23771897
CUACAUGCCGUUGUUGUUUGCAGUUGAUUUGCGUGUAUUUU--UUCUGC-AGUUGAAU-UUUCAGUGCU-GCCUGGCAAAUCGAAUGCGAACAAGUGCCG
.........((..(((((((((.(((((((((..(......--..).((-((((((..-..)))..)))-))...))))))))).)))))))))..)).. ( -28.00)
>DroPse_CAF1 459948 80 - 1
-----------UGUUGCUGGCAUUU---UUGGUUGGGUU-----UUUGG-GGUCGUAUUUUUCAGCACUUUCCUGGCAAAUCGAAUGCGAACAAGUGCCG
-----------.......(((((((---((((((.((((-----((..(-((..((..........))..)))..).))))).))).)))..))))))). ( -18.80)
>DroSec_CAF1 426484 96 - 1
CUAUAUGCCGUUGUUGUUUGCAGUUGAUUUGCGUGCGUUUUU-UUUUGC-AGUUGAAU-UUUCAGUGCU-GCCUGGCAAAUCGAAUGCGAACAAGUGCCG
.........((..(((((((((.(((((((((.((((.....-...)))-).......-...(((....-..)))))))))))).)))))))))..)).. ( -28.70)
>DroSim_CAF1 435188 94 - 1
CUAUUUGCCGUUGUUGUUUGCAGUUGAUUUGCGUGCAUUU---UUUUGC-AGUUGAAU-UUUCAGUGCU-GCCUGGCAAAUCGAAUGCGAACAAGUGCCG
.........((..(((((((((.(((((((((.((((...---...)))-).......-...(((....-..)))))))))))).)))))))))..)).. ( -29.60)
>DroEre_CAF1 435391 93 - 1
CUAUUUGCAGU---UGUUUGCAGUUGAUUUGCAUGUAUUUUUUUUUUGC-AGUUGAAU-UUUCAGUGCU-GC-UGGCAAAUCGAAUGCGAGCAAGUGCCG
......(((.(---((((((((.(((((((((...............((-((((((..-..)))..)))-))-..))))))))).))))))))).))).. ( -34.03)
>DroYak_CAF1 435752 95 - 1
CUAUUUGCCGUUGUUGUUUGCAGUUGUUUUGCAUGUAUUUUU---UUGCAAGUUAAAU-UUUCAGUGCU-GCCUGGCAAAUCGAAUGCGAGCAAGUGCCG
.........((..(((((((((.(((.(((((.((((.....---.))))........-...(((....-..)))))))).))).)))))))))..)).. ( -23.20)
>consensus
CUAUUUGCCGUUGUUGUUUGCAGUUGAUUUGCGUGUAUUUU__UUUUGC_AGUUGAAU_UUUCAGUGCU_GCCUGGCAAAUCGAAUGCGAACAAGUGCCG
.............(((((((((.(((((((((..(((.........))).............(((.......)))))))))))).)))))))))...... (-17.02 = -18.30 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:35 2006