Locus 3583

Sequence ID 3L_DroMel_CAF1
Location 10,543,149 – 10,543,269
Length 120
Max. P 0.544800
window5587

overview

Window 7

Location 10,543,149 – 10,543,269
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 91.55
Mean single sequence MFE -26.63
Consensus MFE -19.62
Energy contribution -19.51
Covariance contribution -0.11
Combinations/Pair 1.06
Mean z-score -2.46
Structure conservation index 0.74
SVM decision value 0.02
SVM RNA-class probability 0.544800
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10543149 120 + 23771897
UUUUUGUAUGUAUUGUACACUGUUAAAUGGCUCUAACGGCUUGAAAUCAAACGUAAAAAUAUUCCAUAAUAUCGUUGACAAUAUUUUUGCCAGUGUAAGCCAGGGCAUACAAAUAAAAGC
..(((((((((.((((((((((......(((.(....))))...........(((((((((((.((.........))..))))))))))))))))))...))).)))))))))....... ( -28.00)
>DroSec_CAF1 422593 115 + 1
UUUUUGUAUG-----UACCUUGUUAAUUGGCUCUAAUGGCUAAAAAUCAAACGUAAAAAUAUUCCAUAAAAUUGUUGUCAAUAUUUUUGCCAGUGUAAGCCAGGGCAUACAAAUAAAAGC
..((((((((-----(.(((.(((..((((((.....))))))....((...(((((((((((.((.........))..)))))))))))...))..))).))))))))))))....... ( -25.70)
>DroSim_CAF1 431074 115 + 1
UUUUUGUAUG-----UACCUUGUUAAUUGGCUCUAACGGCUAGAAAUCAAACGUAAAAAUAUUCCAUAAAAUCUUUGACAAUAUUUUUGCCAGUGUAAGCCAGGGCAUACAAAUAAAAGC
..((((((((-----(.(((.(((.((((((((((.....))))..........(((((((((.((.........))..)))))))))))))))...))).))))))))))))....... ( -26.20)
>consensus
UUUUUGUAUG_____UACCUUGUUAAUUGGCUCUAACGGCUAGAAAUCAAACGUAAAAAUAUUCCAUAAAAUCGUUGACAAUAUUUUUGCCAGUGUAAGCCAGGGCAUACAAAUAAAAGC
..((((((((.......((((((((........))))((((......((...(((((((((((.((.........))..)))))))))))...))..))))))))))))))))....... (-19.62 = -19.51 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:32 2006