| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,536,406 – 10,536,501 |
| Length | 95 |
| Max. P | 0.638197 |
| Location | 10,536,406 – 10,536,501 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 71.30 |
| Mean single sequence MFE | -23.45 |
| Consensus MFE | -9.18 |
| Energy contribution | -9.77 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638197 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10536406 95 + 23771897 UAAAAGCAGUU---AGCAUUUUAUGGCACUAUUU--UUCUCAGUGCAUGUGUGGGUGUGUGCUACUUUUUCCAUUCACUCG---------------CUCAUGCUUCAUUUGGCAA .....((....---(((........(((((....--.....)))))(((.(((((((.(((..........))).))))))---------------).)))))).......)).. ( -22.70) >DroSec_CAF1 415967 90 + 1 ------CAGUU---AGCAUUUUAUGGCACUAUUU-UUUCUCAGUGCAUGUGUGGGUGUGUGCUACUUUUCCCAUUCACUUG---------------CUCAUGCUUCAUUUGGCAA ------..(((---(((........)).......-.........(((((.(..((((.(((..........))).))))..---------------).)))))......)))).. ( -20.00) >DroSim_CAF1 424285 90 + 1 ------CAUUU---AGCAUUUUAUGGCACUAUUU-UUUCUCAGUGCAUGUGUGGGUGUGUGCUACUUUUCCCAUUCACUUG---------------CUCAUGCUUCAUUUGGCAA ------.....---.((.....((((((((....-......)))))(((.(..((((.(((..........))).))))..---------------).)))....)))...)).. ( -19.30) >DroEre_CAF1 425066 82 + 1 UGAAAGCAGUU---AGCAU---------------UUUUCGCAGUGCAUGUGUGGGUGUGUGGCACUUUUCCCAUUCACUCG---------------CUCAUGCUUCAUUUGGCAA .....((....---.((..---------------.....))...(((((.(((((((.((((........)))).))))))---------------).)))))........)).. ( -26.10) >DroYak_CAF1 425117 97 + 1 UGAAAGUAGUU---ACCAUCUUAUGGCACUAUUUUUUGCGCAGUGCAUGUGUGGGUGUGCGGCACUUUUCCCAUUCACUCG---------------CUCAUGCUUCAUUUGGCAA .(((((((((.---.((((...)))).)))))))))(((.(((.(((((.(((((((...((........))...))))))---------------).))))).....)))))). ( -30.30) >DroAna_CAF1 410144 111 + 1 CUAAACUAUUUAUUGGCUAAUUUGGAAACUAUUU-UCUUAAAGUGUAUGUGUGGGUAGCU---UCUUACCUUCUUCUCCAGCUGGCAACCUCCAGCUUCAUGCUUCAUUUGGCAA ...............(((.....(....).....-.....(((((...((((((((((..---..))))).........((((((......)))))).)))))..)))))))).. ( -22.30) >consensus U_AAAGCAGUU___AGCAUUUUAUGGCACUAUUU_UUUCUCAGUGCAUGUGUGGGUGUGUGCUACUUUUCCCAUUCACUCG_______________CUCAUGCUUCAUUUGGCAA .........................(((((...........))))).((.(((((.(((...)))....))))).)).......................((((......)))). ( -9.18 = -9.77 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:26 2006