Locus 3578

Sequence ID 3L_DroMel_CAF1
Location 10,533,018 – 10,533,114
Length 96
Max. P 0.979246
window5578

overview

Window 8

Location 10,533,018 – 10,533,114
Length 96
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 73.39
Mean single sequence MFE -14.36
Consensus MFE -2.62
Energy contribution -3.22
Covariance contribution 0.60
Combinations/Pair 1.42
Mean z-score -2.22
Structure conservation index 0.18
SVM decision value 1.83
SVM RNA-class probability 0.979246
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10533018 96 + 23771897
UACUUA-GCUACUUAGGAAA-------UAAAUACUUAUUCCUAAAAAGGAAAAAUCUUAAGCCCUUGCUUAAAAUUUUCUGAAAAUCCCAACAUUUUUUC-CCCC
......-.....((((((((-------(.........(((((....))))).....((((((....)))))).)))))))))..................-.... ( -14.80)
>DroSec_CAF1 412626 96 + 1
UACUUA-GCUACUUAGGAAA-------UAAAUACUUAUUCCUAAAAAGGAAAAACCUUGAGUCCUAGCUUAAAAUUUUCCGAAAAUCCCAACAUUGUUUC-CCCU
......-........(((((-------(((.......(((((....))))).....((((((....)))))).....................)))))))-)... ( -14.80)
>DroSim_CAF1 421001 97 + 1
UACUUA-GCUACUUAGGAAA-------UAAAUACUUAUUCCUAAAAAGGAAAAAUCUUAAGCCCUAGCUUAAAAUUUUCUGAAAAUCCCAACUUUGCUUCUCCCU
.....(-((...(((((((.-------(((....))))))))))...((((((...((((((....))))))..))))))...............)))....... ( -15.60)
>DroEre_CAF1 421727 93 + 1
AACUGA-GCAAA--AGGAAAGGUGAUGUAAAUAAAU-------AAACGAGUAAAUCUUAAUCCUAUCCUUAACAUUUUCGGAAAAGCCAAACUUUGUUCC-CCC-
....((-(((((--((((.(((.(((..........-------..........))).....))).))))).........((.....)).....)))))).-...- ( -14.15)
>DroYak_CAF1 421726 94 + 1
UACUUAGGCUAA--AGGAAAUGUGACAUAAAUAAAU-------AAACGUCAAAAUCUUAAGACCAUCCUUAACAUUUUCGGUAAAUACCAUCUCUGUUCC-CCC-
....((((....--.(((((((((((..........-------....))).......((((......))))))))))))(((....)))...))))....-...- ( -12.44)
>consensus
UACUUA_GCUACUUAGGAAA_______UAAAUACUUAUUCCUAAAAAGGAAAAAUCUUAAGCCCUUGCUUAAAAUUUUCGGAAAAUCCCAACUUUGUUUC_CCC_
..............................................((((((....((((((....))))))..))))))......................... ( -2.62 =  -3.22 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:24 2006