| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,518,383 – 10,518,480 |
| Length | 97 |
| Max. P | 0.634886 |
| Location | 10,518,383 – 10,518,480 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 73.22 |
| Mean single sequence MFE | -12.93 |
| Consensus MFE | -5.04 |
| Energy contribution | -4.56 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.634886 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10518383 97 - 23771897 AAAUUGUGCAUGAAAAAGCAUUUCAUAUACUUUUUCACUUUACACAU------AA-UCAAAUUUUGAUCCGUGUAUUUAUCCCUUUCAUCUGAAUUACGCAUAC ....(((((.((((((((.((.....)).))))))))...(((((..------.(-(((.....))))..))))).......................))))). ( -16.60) >DroSec_CAF1 397855 86 - 1 AAAUUGUUUAUU-----------------GUUUUUCACUUUACAUAUCAUAUCAA-UCAAAUUUUGAUCCGUGUAUUUAUCCCUUUCAUCUGAAAUACGCAUAC ............-----------------.....................(((((-.......)))))..((((((((..............)))))))).... ( -7.54) >DroSim_CAF1 406221 98 - 1 AAAUUGUUUAUGAAAU-----GUUUUUAAGUUUUUCACUUUACAUUUCAUAUCAA-UCAAAUUUUGAUCCGUGUAUUUAUCCCUUUCAUCUGAAAUACGCAUAC ..((((..((((((((-----((....((((.....)))).)))))))))).)))-).............((((((((..............)))))))).... ( -18.54) >DroEre_CAF1 404814 80 - 1 AAA------------------GUUUUGAAAUGUAUCACUUUACAUAU------GAUGCAAAUUUUGUUCCGUGUAUCUAUGCCUUUCAUCUGGAAUACGCAUAC ...------------------.........(((((((.........)------))))))...........((((((.....((........)).)))))).... ( -12.10) >DroYak_CAF1 406600 92 - 1 AAAAUGUGCAUCAAAU-----GUCUUUAUAUCUUUCGCUUUACACAU------AA-ACAAAUUUUGAUCCGUGUAUCUAACCCUUUCAUCUGGAAUACGCAUAC ....(((((((((((.-----.(.(((((................))------))-).)...))))))..((((.((((...........))))))))))))). ( -9.89) >consensus AAAUUGUGCAUGAAA______GUCUUUAAAUUUUUCACUUUACAUAU______AA_UCAAAUUUUGAUCCGUGUAUUUAUCCCUUUCAUCUGAAAUACGCAUAC ......................................................................(((((((((...........)))).))))).... ( -5.04 = -4.56 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:19 2006