| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,507,975 – 10,508,068 |
| Length | 93 |
| Max. P | 0.521247 |
| Location | 10,507,975 – 10,508,068 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 77.59 |
| Mean single sequence MFE | -15.56 |
| Consensus MFE | -9.58 |
| Energy contribution | -9.47 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.521247 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10507975 93 - 23771897 AACCUAAAAUACUAAAAGCGCUAAAAAAAAAGCACACACAAACAACAAGCAGUUGCCUUGAUGACGUAGUCGACUGAGACUGCACUC-UA----GUUC ..........((((...(.(((........))).).(((((.((((.....))))..))).))..((((((......))))))....-))----)).. ( -16.20) >DroSec_CAF1 387647 90 - 1 AACCUAAAAUACUAAAAGCGCUAAAAAAAAAA---AGAAAUACAACAAGCAGUUGCCUUGAUGACGCAGUCGACUGAGACUGCACUC-UA----GUUC ...................((((.........---.......((.(((((....).)))).))..((((((......))))))....-))----)).. ( -16.10) >DroSim_CAF1 395949 87 - 1 AACCUAAAAUACUAAAAGCGCUAAAAAAAAA------AAAUACAACAAGCAGUUGCCUUGAUGACGUAGUCGACUGAGACUGCACUC-UA----GUUC ...................((((........------.....((.(((((....).)))).))..((((((......))))))....-))----)).. ( -14.10) >DroEre_CAF1 394714 84 - 1 AAACUAAAAUACUGAAAGCGCUAAGAAAC---------AAAAAAAAAAUCAGUUGCCUUGAUGACGUAGUCGACUGAGACUGCACUC-CA----GUUC ..........((((...(((.((((.(((---------.............)))..)))).)).)((((((......))))))....-))----)).. ( -13.62) >DroYak_CAF1 396155 88 - 1 AACCCAAGAUACUGAAAGCGCUCAGAAAAGUG-----AAAAAAAAAAAUCAGUUGCCUUGAUGACGUAGUCGACUGAGACUGCACUC-UA----GUUC ....((((..(((((...((((......))))-----...........)))))...)))).....((((((......))))))....-..----.... ( -17.34) >DroAna_CAF1 385590 84 - 1 AAUUGAAA------------CUAAAAAACAAGUA--CAAAAAAGACAAACAGUCUCCUUGAUGACGUAGCCGGCGGAGACUGCACUGGUACUGCACUC ........------------..........((((--(.....((.....(((((((((((..........))).))))))))..)).)))))...... ( -16.00) >consensus AACCUAAAAUACUAAAAGCGCUAAAAAAAAAG_____AAAAAAAACAAGCAGUUGCCUUGAUGACGUAGUCGACUGAGACUGCACUC_UA____GUUC ...................................................(((........)))((((((......))))))............... ( -9.58 = -9.47 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:15 2006