Locus 3572

Sequence ID 3L_DroMel_CAF1
Location 10,499,548 – 10,499,639
Length 91
Max. P 0.708707
window5568

overview

Window 8

Location 10,499,548 – 10,499,639
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 88.81
Mean single sequence MFE -32.13
Consensus MFE -24.63
Energy contribution -25.30
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.37
Structure conservation index 0.77
SVM decision value 0.37
SVM RNA-class probability 0.708707
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10499548 91 - 23771897
AAUGUCGGGGUGCCGGGAUGCCGGGAUGCUGGGAUGCUGGGAUGUUGCGAUGUUCGGAUGCCGGGUUAACUGGUAAACUGGGAAUCUGGAG
..((.(((.((.((((.((.((((....)))).)).)))).)).)))))...(((((((.((.((((........)))).)).))))))). ( -32.40)
>DroSec_CAF1 379361 86 - 1
GAUGUCGGGCAGCCGGGUUCCCGGGAUGGUGGGAUGCU-----GUUGGGAUGUUCGGAUGCCGGGGUAACUGGUAAACUGGGAAUCUGGAG
............((((((((((((((((((.....)))-----)))............((((((.....))))))..)))))))))))).. ( -32.00)
>DroSim_CAF1 387670 86 - 1
GAUGUCGGGCAGCCGGGUUCCCGGGAUGGUGGGAUGCU-----GUUGGGAUGGUCGAAUGCCGGGGUAACUGGUAAACUGGGAAUCUGGAG
............((((((((((((((((((.....)))-----)))............((((((.....))))))..)))))))))))).. ( -32.00)
>consensus
GAUGUCGGGCAGCCGGGUUCCCGGGAUGGUGGGAUGCU_____GUUGGGAUGUUCGGAUGCCGGGGUAACUGGUAAACUGGGAAUCUGGAG
............((((((((((((((.........((......))........))...((((((.....))))))..)))))))))))).. (-24.63 = -25.30 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:14 2006