| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,499,243 – 10,499,360 |
| Length | 117 |
| Max. P | 0.957806 |
| Location | 10,499,243 – 10,499,360 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.50 |
| Mean single sequence MFE | -24.00 |
| Consensus MFE | -15.28 |
| Energy contribution | -15.76 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.957806 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10499243 117 - 23771897 AAUA--UAUCUGGCAGAUUGACAG-GUAACCUGAUAGGUUAAGAAAACCAUCAACGUUUCAAAGAGCCCUUGUAGCAAUAUAUAUAAAAAUUUCAAUUGACGAGACAUUUGAUCUGCAAC ....--......((((((..((((-(...))))...((((.....))))......(((((..........((((....))))..........((....)).)))))..)..))))))... ( -23.20) >DroSec_CAF1 379059 114 - 1 AAUA--UAUCUGGCAGAUUGACAGGGUAACCCGAUAGGUCAAGAAAACCAUCAAAGUUUCAAAGAGCCCUUGUAGCUAUAUAU----AAAUAUCAAUCGACAAGAUAUUCAAUCUGCGAC ....--......((((((((((((((......(((.(((.......))))))...((((....))))))))))..........----.((((((.........))))))))))))))... ( -25.00) >DroSim_CAF1 387368 114 - 1 AAUA--UAUCUGGCAGAUUGACAGGGUAACCUGAUAGGUUAAGAAAACCAUCAAAGUUUCAAAGAGCCCUUGUAGCUAUAUAU----AAAUAUCAAUCGACAAGACAUUCAAUCUGCGAC ....--......(((((((((((((....))))...((((....((((.......)))).....))))(((((....((((..----..))))......)))))....)))))))))... ( -25.90) >DroEre_CAF1 385923 94 - 1 AAUAUAUAUCUUGCAGCUUGACAG-GUAAUCUGAUAGGUUGAGAAAACC---------UAAGA--------AUCGUUAUAUAU----AAGUGU----UGACGAGACAUUUAAUCUGCAAU ..........((((((..((((.(-((..(((..((((((.....))))---------)))))--------)))))))....(----((((((----(.....))))))))..)))))). ( -21.10) >DroYak_CAF1 387006 112 - 1 AAUA--UGUCUAGCAGAUUGACAG-GUAACCUGAUAGGUUUCAAAAACCAACAAAGCUUAAGAGAGC-CUUAUACUUAUAUAU----AAAUGUCAAUUGAUGAGACUUUUAAUCUGCAAU ....--......((((((((((((-(...))))..((((((((..((...(((..((((....))))-.(((((......)))----)).)))...))..)))))))))))))))))... ( -24.80) >consensus AAUA__UAUCUGGCAGAUUGACAG_GUAACCUGAUAGGUUAAGAAAACCAUCAAAGUUUCAAAGAGCCCUUGUAGCUAUAUAU____AAAUAUCAAUUGACGAGACAUUUAAUCUGCAAC ............((((((((((((......)))...((((.....))))...................(((((......((((......))))......)))))....)))))))))... (-15.28 = -15.76 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:13 2006