Locus 3570

Sequence ID 3L_DroMel_CAF1
Location 10,490,208 – 10,490,312
Length 104
Max. P 0.633468
window5566

overview

Window 6

Location 10,490,208 – 10,490,312
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 95.16
Mean single sequence MFE -12.70
Consensus MFE -12.36
Energy contribution -12.56
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.06
Structure conservation index 0.97
SVM decision value 0.21
SVM RNA-class probability 0.633468
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10490208 104 - 23771897
UAUAUAUUUAUUUAUAACUUUUCAUUUCAUUUCAUCUGCGCGUUUUUCUCGCCUUCUUCGCUUUGGCUAAUUUUCGGCACUGCACUUUUUUGGCAUUUCAAAAA
....................................((((((.......))).......((..((.(........).))..)).........)))......... (  -9.80)
>DroSec_CAF1 370049 103 - 1
UAUAUAUUUAUUUAUAACUUUUCAUUUCAUUUCAUCUGCGCGUUUUUCUCGCCUCCUUCGCUUUGGCUGAUUUUCGGCACUGCACUUU-UUGGCAUUUCAAAAA
....................................((((((.......))).......((....((((.....))))...)).....-...)))......... ( -13.20)
>DroSim_CAF1 378182 103 - 1
UAUAUAUUUAUUUAUAACUUUUCAUUUCAUUUCAUCUGCGCGUUUUUCUCGCCUCGUUCGCUUUGGCUGAUUUUCGGCACUGCACUUU-UUGGCAUUUCAAAAA
....................................((((((.......))).......((....((((.....))))...)).....-...)))......... ( -13.20)
>DroEre_CAF1 376657 101 - 1
UAUAUAUUUAUUUAUAACUUUUCAUUUCAUUU-CUCUGCGCGUUUUUCUCGCCUCCUUCGCUUUGGCUGAUUUUCGGCACUGCACUUU--UCGCAUUUCAAAAA
................................-...((((((.......))).......((....((((.....))))...)).....--..)))......... ( -13.50)
>DroYak_CAF1 377851 101 - 1
UAUAUAUUUAUUUAUAACUUUUCAUUUCAUUU-AUCUGCGCGUUUUGUUCGCCUCCUUUGCUUUGGCUGAUUUUCGGCACUGCACUUU--UCGCAUUUCAAAAA
................................-...((((((.......)))......(((....((((.....))))...)))....--..)))......... ( -13.80)
>consensus
UAUAUAUUUAUUUAUAACUUUUCAUUUCAUUUCAUCUGCGCGUUUUUCUCGCCUCCUUCGCUUUGGCUGAUUUUCGGCACUGCACUUU_UUGGCAUUUCAAAAA
....................................((((((.......))).......((....((((.....))))...)).........)))......... (-12.36 = -12.56 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:12 2006