Locus 357

Sequence ID 3L_DroMel_CAF1
Location 1,041,260 – 1,041,357
Length 97
Max. P 0.611490
window526

overview

Window 6

Location 1,041,260 – 1,041,357
Length 97
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 82.65
Mean single sequence MFE -35.07
Consensus MFE -26.13
Energy contribution -27.03
Covariance contribution 0.90
Combinations/Pair 1.25
Mean z-score -1.69
Structure conservation index 0.75
SVM decision value 0.16
SVM RNA-class probability 0.611490
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1041260 97 + 23771897
UUUGGGUUCGGAGGUUUUCCGA-CUGUGAGCUGCGAGCGGGUAGCGAAUAGCGGGGGGUUGAGACUGACGUCGGCUGCUUGAUGUGGCUGACCAAAUU
(((((..((((.((..(((((.-((((..(((((......)))))..)))))))))..))....))))..(((((..(.....)..)))))))))).. ( -36.60)
>DroSec_CAF1 15934 98 + 1
UUUGGGGUCGGAGGUUUUCCGAGCUGCGAGCGUGGAGUGGGCAGCGGCUAGCGGGGAGUUGAGACUGACGUCGGCUGCUUGAUGUGGCUGACCAAAUU
(((((.(((((.(..(..(((((((((..((.(.....).)).))))))..)))..)..)....))))).(((((..(.....)..)))))))))).. ( -38.60)
>DroYak_CAF1 16610 96 + 1
UUUGGGGUUGGAUGCU--GGGAGUUGGGAGCUGGGAGCUGGGAGCUGGAAGCUGCGAGUUGAGACUGACGUCGGCUGCUUGAUGUGGCUGACCAAAUU
(((((((((....(((--.(.((((...((((..........))))...)))).).)))...))))....(((((..(.....)..)))))))))).. ( -30.00)
>consensus
UUUGGGGUCGGAGGUUUUCCGAGCUGCGAGCUGGGAGCGGGCAGCGGAUAGCGGGGAGUUGAGACUGACGUCGGCUGCUUGAUGUGGCUGACCAAAUU
(((((.(((((.(((((((((.(((((..((.....))..)))))......)))))))))....))))).(((((..(.....)..)))))))))).. (-26.13 = -27.03 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:57 2006