Locus 3568

Sequence ID 3L_DroMel_CAF1
Location 10,482,528 – 10,482,620
Length 92
Max. P 0.647871
window5563

overview

Window 3

Location 10,482,528 – 10,482,620
Length 92
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 79.60
Mean single sequence MFE -18.97
Consensus MFE -16.19
Energy contribution -16.30
Covariance contribution 0.11
Combinations/Pair 1.06
Mean z-score -1.07
Structure conservation index 0.85
SVM decision value 0.24
SVM RNA-class probability 0.647871
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10482528 92 + 23771897
-------UUUUACUUGAAAUAAAAUUUUCAAGAAUUAAAUU-UCUCAGAGAGUCGCAGAAAAUGCCGAGUAUUGGUGCACUUUUAGCGCCUAAACUCCAA
-------.....(((((((......))))))).........-............(((.....))).((((...(((((.......)))))...))))... ( -20.70)
>DroEre_CAF1 368801 100 + 1
AUAAGGAAUCUACUUGAAACAAAGUUUUCAAGAAUUAAAUUUUCCCAGUAUGUCAGGAUAAACGUCGAGUAUUGGUGCACUUUUAGCGCCUAAACUCCAC
....((((....(((((((......))))))).........))))..((.(((....))).))((.((((...(((((.......)))))...)))).)) ( -19.12)
>DroYak_CAF1 369595 99 + 1
AUAGUAGAUUUACUUGAAAUAAAGUUUUCAAGAAUUAAAUU-UCCCAGAAAAUCAGGCUAAACGCUGGGUAUUGGUGCACUUUUAGGGCCUAAACUCCAC
.....((((((((((((((......)))))))...))))))-)(((((................)))))..((((.((.((....))))))))....... ( -17.09)
>consensus
AUA____AUUUACUUGAAAUAAAGUUUUCAAGAAUUAAAUU_UCCCAGAAAGUCAGGAUAAACGCCGAGUAUUGGUGCACUUUUAGCGCCUAAACUCCAC
............(((((((......)))))))..................................((((...(((((.......)))))...))))... (-16.19 = -16.30 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:10 2006