Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,460,535 – 10,460,634 |
Length | 99 |
Max. P | 0.940885 |
Location | 10,460,535 – 10,460,634 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 89.86 |
Mean single sequence MFE | -22.33 |
Consensus MFE | -19.60 |
Energy contribution | -19.16 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.26 |
Mean z-score | -2.07 |
Structure conservation index | 0.88 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940885 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10460535 99 - 23771897 UGGGUGGAUAAAGAGAUUUACCCAGGCCA-----CUCUGAACAUAAUAAAAAAUGUGAAGGUGCCGGAUCGUAUUAUGAAAAUGACAUUAAAAUGGCAA-AAGGA (((((((((......)))))))))..((.-----.(((..((((........))))..)))(((((....((.((((....)))).)).....))))).-..)). ( -23.50) >DroSec_CAF1 332237 98 - 1 UGGGUGGAUAAAGAGAUUUACCCAGGCCA-----CUCUGAACAUAAUAA-AAAUGUGAAGGUGCCGGGUCGUAUUAUGAAAAUGACAUUAAAAUGGCAA-AAGGA (((((((((......)))))))))(((.(-----(.((..((((.....-..))))..)))))))..(((((.(((((.......)).))).)))))..-..... ( -23.90) >DroSim_CAF1 348837 98 - 1 UGGGUGGAUAAAGAGAUUUACCCAGGCCA-----CUCUGAACAUAAUAA-AAAUGUGAAGGUGCCGGGUCGUAUUAUGAAAAUGACAUUAAAAUGGCAA-AAGGA (((((((((......)))))))))(((.(-----(.((..((((.....-..))))..)))))))..(((((.(((((.......)).))).)))))..-..... ( -23.90) >DroEre_CAF1 345835 99 - 1 UGGGUGGAUAAAGAGAUUUACCCAGGCCA-----CUCUGAACAUAAUAA-AAAUGUGAAGGUGCCGCGUCGUAUUAUGAAAAUGACAUUAAAAUGGCAAAAAGGA (((((((((......)))))))))(((.(-----(.((..((((.....-..))))..)))))))..(((((.(((((.......)).))).)))))........ ( -24.20) >DroYak_CAF1 346644 98 - 1 UGGGUGGAUAAAGAGAUUUACCCAAGCCA-----CUCUGAACAUAAUAA-AAAUGUGAAGGUGCCGCCUCGUAUUAUGAAAAUGACAUUAAAAUGGCAA-AAGGA (((((((((......)))))))))..((.-----.(((..((((.....-..))))..)))(((((....((.((((....)))).)).....))))).-..)). ( -22.10) >DroAna_CAF1 337935 104 - 1 AGGGAAGUUUAAGAGAUUUACUUUGGCCAGCCACCCCUGAAGAUAAUAA-AGAUGUUAAGGUGCCGGUGCUUAUUAUAAAAAUGGCAUUAAAACGACAAAAAGGA (((((((((.....)))))....(((....))).))))...........-.(.((((..(((((((................)))))))..)))).)........ ( -16.39) >consensus UGGGUGGAUAAAGAGAUUUACCCAGGCCA_____CUCUGAACAUAAUAA_AAAUGUGAAGGUGCCGGGUCGUAUUAUGAAAAUGACAUUAAAAUGGCAA_AAGGA (((((((((......)))))))))..((.......(((..((((........))))..)))(((((.......((((....))))........)))))....)). (-19.60 = -19.16 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:06 2006