Locus 3564

Sequence ID 3L_DroMel_CAF1
Location 10,427,951 – 10,428,070
Length 119
Max. P 0.756086
window5558

overview

Window 8

Location 10,427,951 – 10,428,070
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.14
Mean single sequence MFE -26.15
Consensus MFE -21.34
Energy contribution -22.15
Covariance contribution 0.81
Combinations/Pair 1.03
Mean z-score -2.04
Structure conservation index 0.82
SVM decision value 0.49
SVM RNA-class probability 0.756086
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10427951 119 + 23771897
CAAGAAAACAUGUUAAGUGCAGUCGCAUUAUGUUGCAAAAUGUCACUUUUAAUUGGGCAACCUUGAAACAUCAAUGUGAGAAACGAGCGAAAGAA-CAGCUAACAGCAUUAGUAACAACA
..........(((((.((((..((((((((((((.(((..((((.(........)))))...))).))))).)))))))......(((.......-..)))....))))...)))))... ( -25.10)
>DroEre_CAF1 310247 119 + 1
CAAGAAAACAUGUUAAGUGCAGUCGCAUUAUGUUGCAAAAUGUCACUUUUAAUUGGGCAACCUUGAAACAUCAAUGUGAAAAACGAGCGAAAGAA-CAGCUAACAGCAUUAGUAACAACA
..........(((((.((((..((((((((((((.(((..((((.(........)))))...))).))))).)))))))......(((.......-..)))....))))...)))))... ( -25.10)
>DroWil_CAF1 481132 118 + 1
UGAGAAAACAUGUUAAGUGCAGUCGCAUUAUGUUGCAAAAUGUCACUUUUAAUUGGGCAACCUUGAAACAUCAAUGCGAAAAACGAGCGAAAGACUCAGCAAACGGCAAUGGCAA--ACG
........((((((...(((..((((((((((((.(((..((((.(........)))))...))).))))).))))))).....((((....).))).)))...))).)))....--... ( -29.30)
>DroYak_CAF1 312338 119 + 1
CAAGAAAACAUGUUAAGUGCAGUCGCAUUAUGUUGCAAAAUGUCACUUUUAAUUGGGCAACCUUGAAACAUCAAUGUGAAAAACGAGCGAAAGAA-CAGCUAACAGCAUUAGUAACAACA
..........(((((.((((..((((((((((((.(((..((((.(........)))))...))).))))).)))))))......(((.......-..)))....))))...)))))... ( -25.10)
>consensus
CAAGAAAACAUGUUAAGUGCAGUCGCAUUAUGUUGCAAAAUGUCACUUUUAAUUGGGCAACCUUGAAACAUCAAUGUGAAAAACGAGCGAAAGAA_CAGCUAACAGCAUUAGUAACAACA
..........((((((((((..((((((((((((.(((..((((.(........)))))...))).))))).)))))))........(....)............)))))..)))))... (-21.34 = -22.15 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:05 2006