| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,424,971 – 10,425,075 |
| Length | 104 |
| Max. P | 0.526650 |
| Location | 10,424,971 – 10,425,075 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 86.32 |
| Mean single sequence MFE | -31.77 |
| Consensus MFE | -22.97 |
| Energy contribution | -23.38 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.526650 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10424971 104 - 23771897 GUGUUU-----------GCCAUCGGCCAAUUGUCAUUAAUUAGCCAGCAAUUUUCUGUUGGCGGCUUUUAAUUUAGCCAAACGAAACUGCCAACUUGCAACGAGCAGGUAAUCCA ....((-----------(((...(((...((((.........(((((((......)))))))((((........))))..))))....)))....(((.....)))))))).... ( -29.70) >DroSec_CAF1 295934 104 - 1 GUGUUU-----------GCCAUCGGCCAAUUGGCAUUAAUUAGCCAGCAAUUUUCUGUUGGCGGCUUUUAAUUUGGCCAAACGAAACUGCCAACUUGCAACGCGCAGGCAAUCCA .(((((-----------((.....((...((((((.......(((((((......)))))))((((........)))).........))))))...)).....)))))))..... ( -35.40) >DroSim_CAF1 311648 104 - 1 GUGUUU-----------GCCAUCGGCCAAUUGGCAUUAAUUAGCCAGCAAUUUUCUGUUGGCGGCUUUUAAUUUGGCCAAACGAUACUGCCAACUUGCAACGCGCAGGCAAUCCA .(((((-----------((.....((...((((((.((....(((((((......)))))))((((........))))......)).))))))...)).....)))))))..... ( -35.40) >DroEre_CAF1 307377 92 - 1 GUGUUU-----------GCCAUCGGCCAAUUGGCAUUAAUUAGCCAGCAAUUUUCUGUUGGCGGCUUUUAAUUUGGCCAAAG------------UUGCAACGUGCGGGCAAUCCA ....((-----------(((...((((((..(((........(((((((......))))))).)))......))))))....------------.(((.....)))))))).... ( -30.70) >DroYak_CAF1 309468 104 - 1 GUGUUU-----------GCCAUCGGCCAAUUGGCAUUAAUUAGCCAGCAAUUUUCUGUUGGCGGCUUUUAAUUUGGCCAAACAAAACUGCCAGCUCACAGCGUGCAGGCAAUCCA .(((((-----------(((..........(((((.......(((((((......)))))))((((........)))).........)))))((.....))).)))))))..... ( -34.00) >DroAna_CAF1 301394 115 - 1 GUUUUUUCCACACUGUAGCCAUCGGCCAUUUGGCAUUAAUUAGCCAGCAAUUUUCUGUUGGCGGCUUUUAAUUUUACCAAACGAAACUGCCAACUAACAGCGCACCAGCAAUCCA ((((............((((....(((....)))........(((((((......)))))))))))............)))).................((......))...... ( -25.45) >consensus GUGUUU___________GCCAUCGGCCAAUUGGCAUUAAUUAGCCAGCAAUUUUCUGUUGGCGGCUUUUAAUUUGGCCAAACGAAACUGCCAACUUGCAACGCGCAGGCAAUCCA .................(((....(((....)))........(((((((......)))))))((((........))))............................)))...... (-22.97 = -23.38 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:02 2006