Locus 3559

Sequence ID 3L_DroMel_CAF1
Location 10,419,766 – 10,419,864
Length 98
Max. P 0.622998
window5550

overview

Window 0

Location 10,419,766 – 10,419,864
Length 98
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 70.04
Mean single sequence MFE -18.99
Consensus MFE -4.05
Energy contribution -5.05
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.78
Structure conservation index 0.21
SVM decision value 0.18
SVM RNA-class probability 0.622998
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10419766 98 - 23771897
ACCCUUCAAGCUCCCCUUUUUCCACAAUCUCAUUCAGCCAACUGUAAUAUUGCGGUGGGGUACUAAAAGUUUUGAUGGGUUCAAG-CAGGCUGAAGAAC
...(((((.(((...(((..(((((((.((......(((.((((((....))))))..)))......))..))).))))...)))-..))))))))... ( -22.50)
>DroSec_CAF1 290804 77 - 1
ACCCUUCAAGCUCCCCUUUUUCCAUCAUCUCAUUCAGCCAACUGCAAUAUUGCAG-GGGGUUCUAAAA---------------------GCUGAAGCAC
...(((((.(((((((............((.....))....(((((....)))))-)))).......)---------------------)))))))... ( -16.71)
>DroSim_CAF1 306514 77 - 1
ACCCUUCAAGCUCCCCUUUUUCCAUCAUCGCAUUCAGCCAACUGCAAUAUUGCAG-GGGGUACUAAAA---------------------GCUGAAGCAC
...(((((.(((((((.............((.....))...(((((....)))))-)))).......)---------------------)))))))... ( -20.01)
>DroEre_CAF1 301788 97 - 1
ACCCUUCAUGCUCCCCCCUUUCCGCCAUCUCAUUCAGCCCACUGCAAUAUGGAAA-GAAGUAAUAAAAGUAUUGACGGUGUCAUG-AGGGCUGAAACAC
..(((((((((.((...((((...((((...((((((....))).)))))))...-))))(((((....)))))..)).).))))-))))......... ( -19.80)
>DroYak_CAF1 303960 84 - 1
ACCCUUCAUGCUCCCCCUUUUCCACCAUCUCAUUCAGCCCACUGCAAU-------------AAUAAAAGUGUUGAUAGGGUCAUGCAAGGCUA--ACAC
..((((((((...(((..((..(((......((((((....))).)))-------------.......)))..))..))).)))).))))...--.... ( -15.92)
>consensus
ACCCUUCAAGCUCCCCUUUUUCCACCAUCUCAUUCAGCCAACUGCAAUAUUGCAG_GGGGUACUAAAAGU_UUGA__G__UCA_G___GGCUGAAGCAC
................................(((((((.................................................))))))).... ( -4.05 =  -5.05 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:58 2006