Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,416,591 – 10,416,691 |
Length | 100 |
Max. P | 0.808227 |
Location | 10,416,591 – 10,416,691 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 75.50 |
Mean single sequence MFE | -16.95 |
Consensus MFE | -9.33 |
Energy contribution | -10.00 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.79 |
Structure conservation index | 0.55 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808227 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10416591 100 - 23771897 GGCAGCCUCGACUCAAUCGUCAACUCAUUGAGAUAUUGAUCUGCC-ACCCCCCCUCCUCGAUCCUC-GAUUCC-ACCGAUUUC---AUAUAUACAUAUAUACAAUU (((((..((((((((((.(......)))))))...)))).)))))-.............((...((-(.....-..)))..))---.................... ( -15.80) >DroPse_CAF1 313216 89 - 1 AGCAGCCUCGACUCAAUCGUCAACUCAUUGAGAUAUUGAUCUGGCUAUCC---CCGCUCUACCCCCCUCACCC-CCCUCUUUU---AGCCA----------GCUUU (((........((((((.(......))))))).........((((((...---....................-........)---)))))----------))).. ( -12.98) >DroSec_CAF1 287609 98 - 1 GGCAGCCUCGACUCAAUCGACAACUCAUUGAGAUAUUGAUCUGCC-ACC----CUCCUCGAUCC--GGGUUCC-CCCGAUUUCUAUAUACAUAUAUAUAUACAAUU (((((..((((((((((.((....))))))))...)))).)))))-...----......((..(--(((....-))))...))((((((......))))))..... ( -21.80) >DroEre_CAF1 298353 96 - 1 GGCAGCCUCGACUCAAUCGUCAACUCAUUGAGAUAUUGAUCUGCC-ACC----CUCCUCGAUCCUCCAGUUCC-CCGGAUUUCUAUAAACAUAUAUA----GCGUU (((((..((((((((((.(......)))))))...)))).)))))-...----......(((((.........-..))))).(((((......))))----).... ( -18.00) >DroYak_CAF1 300566 97 - 1 GGCAGCCUCGACUCAAUCGUCAACUCAUUGAGAUAUUGAUCUGCC-ACC----CUCCUCGAUCCUCAGGUUCCCCCAGAUUUCUAUAUACAUAUAUA----GAGUU (((((..((((((((((.(......)))))))...)))).)))))-...----..(((.(.....))))...........((((((((....)))))----))).. ( -20.00) >DroPer_CAF1 299833 88 - 1 AGCAGCCUCGACUCAAUCGUCAACUCAUUGAGAUAUUGAUCUGGCUAUCC---CCGCUCUACCCCGCUCUACC-CC-CCUUUC---AGCCA----------GCUUU (((((((((((((((((.(......)))))))...))))...))))....---..((........))......-..-......---.....----------))).. ( -13.10) >consensus GGCAGCCUCGACUCAAUCGUCAACUCAUUGAGAUAUUGAUCUGCC_ACC____CUCCUCGAUCCUCCGGUUCC_CCCGAUUUC___AUACAUAUAUA____GAAUU (((((..((((((((((.(......)))))))...)))).)))))............................................................. ( -9.33 = -10.00 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:53 2006