Locus 3554

Sequence ID 3L_DroMel_CAF1
Location 10,414,072 – 10,414,164
Length 92
Max. P 0.949883
window5544

overview

Window 4

Location 10,414,072 – 10,414,164
Length 92
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 92.75
Mean single sequence MFE -19.61
Consensus MFE -17.41
Energy contribution -18.63
Covariance contribution 1.22
Combinations/Pair 1.03
Mean z-score -2.84
Structure conservation index 0.89
SVM decision value 1.40
SVM RNA-class probability 0.949883
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10414072 92 - 23771897
CCAAAGCAGUAAAUACCCAAACGAUUUACUGUUUGUUGGCUUUAAGUAUAAACAUGAAUUUAUCUAAUUUUUAUGCCGUACUUAAACAAACA
...(((((((((((.........)))))))))))(((...(((((((((...((((((...........))))))..)))))))))..))). ( -20.40)
>DroSec_CAF1 285156 92 - 1
CUAAUGCAGCAAAUACCCAAACGAUUUACUGUUUGUUGGCUAUAAGUAUGCACAUGAAUUUAUACCAUUUUUAUGCCGUACUUAAACAAACA
......(((((((((..............)))))))))....((((((((..((((((...........)))))).))))))))........ ( -16.24)
>DroSim_CAF1 300882 92 - 1
CGAAGGCAGUAAAUACCCAAACGAUUUACUGUUUGUUGGCUUUAAGUAUGCACAUGAAUUUAUCCCAUUUUUAUGCCGUACUUAAACAAACA
...(((((((((((.........)))))))))))(((...((((((((((..((((((...........)))))).))))))))))..))). ( -22.20)
>consensus
CCAAAGCAGUAAAUACCCAAACGAUUUACUGUUUGUUGGCUUUAAGUAUGCACAUGAAUUUAUCCCAUUUUUAUGCCGUACUUAAACAAACA
...(((((((((((.........)))))))))))(((...((((((((((..((((((...........)))))).))))))))))..))). (-17.41 = -18.63 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:52 2006