| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,411,939 – 10,412,035 |
| Length | 96 |
| Max. P | 0.511462 |
| Location | 10,411,939 – 10,412,035 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 85.92 |
| Mean single sequence MFE | -30.43 |
| Consensus MFE | -23.42 |
| Energy contribution | -24.12 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.77 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.511462 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10411939 96 - 23771897 UUUU-GGCCCUUUUGGCCAUGGACAUUAACCUGUCAACGUGGCCAAGUUUGCAACACAUUUAGUGGCCGGCCCGAAGGAGCAAGUUCAAAAUUAAGC ....-.(((((((.((((...((((......)))).....(((((....((.....)).....))))))))).))))).))................ ( -30.70) >DroSec_CAF1 283080 95 - 1 UCU--CGCCCUUUUGGCCAUGGACAUUAACCUGUCAACGUGGCCAAGUUUGCAACACAUUUAGUGGCCGGCCCGAAGGAGCAAGUUCAAAAUUAGGC ...--.(((((((.((((...((((......)))).....(((((....((.....)).....))))))))).))))).))................ ( -31.00) >DroSim_CAF1 298711 97 - 1 UCUUCCUCCCUUUUGGCCAUGGACAUUAACCUGUCAACGUGGCCAAGUUUGCAACACAUUUAGUGGCCGGCCCGAAGGCGCAAGUUCGAAAUUAGGC ........(((((((((((((((((......))))..))))))))))(((((..(((.....)))(((........)))))))).........))). ( -30.60) >DroEre_CAF1 293845 84 - 1 UGU--GGCCCUUUUGGCCAUGCACAUUAACCUGUCAACGUGGCCAAGUUUGCAACACAUUUAGUGGCCGGCCCGAAGGAGCAAAAU----------- ...--.(((((((.((((.((.(((......)))))....(((((....((.....)).....))))))))).))))).)).....----------- ( -27.90) >DroYak_CAF1 296098 95 - 1 UGU--GGCCCUUUUGGCCAUGGACAUUAACCUGUCAACGUGGCCAAGUUUGCAACACAUUUAGUGGCCGGCCCGAAGGCACAAGUUCAGAAUUAAGC (((--(..(((((.((((...((((......)))).....(((((....((.....)).....))))))))).)))))))))............... ( -30.00) >DroAna_CAF1 289413 95 - 1 CCAC-GGAUCUGCUGGCCAUGGACAUUAACCUGUCAACGUGGCCAAGUUUGCAACACAUUUAGUGGA-GGCCCAAAGGCGCAAGUUCAAUUCGAGGU ((.(-((((..((((((((((((((......))))..))))))))...((((..(((.....)))..-.(((....)))))))))...))))).)). ( -32.40) >consensus UCU__GGCCCUUUUGGCCAUGGACAUUAACCUGUCAACGUGGCCAAGUUUGCAACACAUUUAGUGGCCGGCCCGAAGGAGCAAGUUCAAAAUUAGGC ........(((((.((((...((((......)))).....(((((....((.....)).....))))))))).)))))................... (-23.42 = -24.12 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:51 2006