Locus 3552

Sequence ID 3L_DroMel_CAF1
Location 10,408,179 – 10,408,281
Length 102
Max. P 0.781090
window5542

overview

Window 2

Location 10,408,179 – 10,408,281
Length 102
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 83.89
Mean single sequence MFE -24.66
Consensus MFE -18.07
Energy contribution -18.91
Covariance contribution 0.84
Combinations/Pair 1.25
Mean z-score -1.90
Structure conservation index 0.73
SVM decision value 0.56
SVM RNA-class probability 0.781090
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10408179 102 - 23771897
AAGUCACCCUU-UUUCCACUCGGAGUAGGUACGAAAAUAAUUUCAGUGCACUCACCCGCGCACGACUUGCUCUUGGACUUCGACUCCAACAUCGCCUCUGACU
.(((((.....-..((((...(((((((((.(((((....)))).((((.(......).))))))))))))))))))...(((........)))....))))) ( -25.60)
>DroSec_CAF1 279341 98 - 1
UAGUCACCC-----UUUACCAAGAGCUGGUAACAAAAUUGUUUCAGUGCACUCACCCGCGCACGACUUGCUCUUGGACUUCGACUCCAACAUCGCCUCUGACU
.(((((...-----....((((((((.(((((((....))))...((((.(......).)))).))).))))))))....(((........)))....))))) ( -26.60)
>DroSim_CAF1 295029 102 - 1
UAGUCACCCAU-UUUUUACCCAGAGCUUGUAACAAAAUUGUUUCAGUGCACUCACCCGCGCACGACUUGCUCUUGGACUUCGACUCCAACAUCGCCUCUGACU
.(((((.....-......((.(((((..((((((....))))...((((.(......).)))).))..))))).))....(((........)))....))))) ( -21.90)
>DroEre_CAF1 290139 102 - 1
CAGUACGUAUU-GUCGCACCCUGAGCGGGUACUGAUAUUUUUGCAGUGUACUCACCCGCGCACGACUUGCUCUUGGACUUCGACUCCAACAUCGCCUCUGACU
(((...(((..-((((.....((.((((((....(((((.....)))))....)))))).)))))).)))..(((((.......)))))........)))... ( -23.10)
>DroYak_CAF1 292229 103 - 1
UAGUCGAUCUUGGUCCCACCCUAAGCAGGUACUGAUAUUCUUUCAGUGCACUCACCCGCGCACGACUUGCUCUUGGACUUCGACUCCAACAUCGCCUCUGACU
.((((((....(((((.......(((((((..(((.......)))((((.(......).)))).)))))))...))))))))))).................. ( -26.10)
>consensus
UAGUCACCCUU_GUUCCACCCAGAGCAGGUACCAAAAUUGUUUCAGUGCACUCACCCGCGCACGACUUGCUCUUGGACUUCGACUCCAACAUCGCCUCUGACU
.(((((............((.(((((((((...............((((.(......).)))).))))))))).))....(((........)))....))))) (-18.07 = -18.91 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:50 2006