Locus 3551

Sequence ID 3L_DroMel_CAF1
Location 10,397,542 – 10,397,646
Length 104
Max. P 0.944350
window5541

overview

Window 1

Location 10,397,542 – 10,397,646
Length 104
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 73.20
Mean single sequence MFE -21.11
Consensus MFE -16.01
Energy contribution -17.17
Covariance contribution 1.17
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 0.76
SVM decision value 1.34
SVM RNA-class probability 0.944350
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10397542 104 + 23771897
CUGGGGCUAUUUGUUAUCUCAAGGCGUUGAAAUUAUAAAUUGUUUUGAGUGCUAGCCCCACGCGAGUCACCGAAAAAUACA-------AAAUACGAAAUAAAAAGCAAGAA
..(((((((...((...(((((((((..............))))))))).)))))))))((....))..............-------....................... ( -23.14)
>DroVir_CAF1 309887 82 + 1
UCGGGGCUAUUUGUUAUCUCAAGGCGUUGAAAUUAUAAAUUGUUUUGAGUGCAACCCCAAAG----AGA--GAGAGAGCCA-------GAAACUA----------------
..((((....((((...(((((((((..............))))))))).))))))))....----...--..........-------.......---------------- ( -18.04)
>DroGri_CAF1 286881 85 + 1
UCG-GGCUAUUUGUUAACUCAAGGCGUUGAAAUUAUAAAUUGUUUUGAGUGCAACCCCAUUGAGAGAGA--GAGAGAUAAA-------GACUGUG----------------
..(-((....((((..((((((((((..............)))))))))))))).)))...........--..........-------.......---------------- ( -15.24)
>DroSec_CAF1 268798 111 + 1
CUGGGGCUAUUUGUUAUCUCAAGGCGUUGAAAUUAUAAAUUGUUUUGAGUGCUAGCCCCACGCGAGUCUCCGAAAAAUACAAAAUACAAAAUACGAAAUAAAAAGCAAGAA
..(((((((...((...(((((((((..............))))))))).)))))))))((....))............................................ ( -23.14)
>DroSim_CAF1 280803 111 + 1
CUGGGGCUAUUUGUUAUCUCAAGGCGUUGAAAUUAUAAAUUGUUUUGAGUGCUAGCCCCACGCGAGUCUCCGAAAAAUACAAAAUACAAAAUACGAAAUAAAAAGCAAGAA
..(((((((...((...(((((((((..............))))))))).)))))))))((....))............................................ ( -23.14)
>DroAna_CAF1 276224 100 + 1
CUGGGGCUAUUUGUUAUCUCAAGGCGUUGAAAUUAUAAAUUGUUUUGAGUGCUAGCCCCACGCGAGUUUCCAAAGAAAUAA-------UAAUA---AGAAAAAAACAAGA-
.((((((((...((...(((((((((..............))))))))).)))))))))).....(((((....)))))..-------.....---..............- ( -23.94)
>consensus
CUGGGGCUAUUUGUUAUCUCAAGGCGUUGAAAUUAUAAAUUGUUUUGAGUGCUAGCCCCACGCGAGUCACCGAAAAAUACA_______AAAUACG_AAUAAAAAGCAAGA_
..(((((((...((...(((((((((..............))))))))).))))))))).................................................... (-16.01 = -17.17 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:49 2006