Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,396,791 – 10,396,887 |
Length | 96 |
Max. P | 0.947765 |
Location | 10,396,791 – 10,396,887 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 77.95 |
Mean single sequence MFE | -26.36 |
Consensus MFE | -14.38 |
Energy contribution | -15.26 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.17 |
Mean z-score | -2.27 |
Structure conservation index | 0.55 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.947765 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10396791 96 - 23771897 AACCCAAACCCAAACCCAAUGCGAUACCGAA----UCCAAACAUCAAAUCGAAAA----GUUUUCGGGCUCGGGAAA-AAAGGGUUUGGCC------GUGAUAUUUCAUGU .........((((((((.........((((.----.((((((.((.....))...----))))..))..))))....-...)))))))).(------((((....))))). ( -25.29) >DroPse_CAF1 294657 92 - 1 -------CCCCUCCCC-----CGCACCCCGG----UCCGAAAACCCAAUCGAAAGAGCGCUUUUUGGGAUCGUGA---AAAGGGUUUGGCUGGCUGUGUGAUAUUUCAUGU -------.........-----(((((.((((----((...((((((..((....))(((.((.....)).)))..---...))))))))))))..)))))........... ( -25.60) >DroSec_CAF1 268064 97 - 1 AACCAAAACCCAAACCCAAAGCGAUACCGAA----UCCCAACUCCCAAUCGAAAA----GUUUUGGGGCUCGGGAAAAAAAGGGUUUGGCU------GUGAUAUUUCAUGU .........((((((((.........((((.----.(((((..(...........----)..)))))..))))........))))))))..------((((....)))).. ( -28.13) >DroSim_CAF1 280063 97 - 1 AACCAAAACCCAAACCCAAAGCGAUACCGAA----UCCCAACUCCCAAUCGAAAA----GUUUUCGGGCUCGGGAAAAAAAGGGUUUGGCU------GUGAUAUUUCAUGU .........((((((((...(.(((.....)----)).)...((((..(((((..----...)))))....))))......))))))))..------((((....)))).. ( -24.30) >DroYak_CAF1 280978 101 - 1 AAUCCAAACCCAAACCCAAAGCGAUACCGAAUCAAUCCCAACUCCAAAUCGAAAA----GUUUUUGGGUUCGGGAAAAAAAGGGUUUGGCU------GUGAUAUUUCAUGU .........((((((((.....(((.....)))..(((((((.(((((.......----...)))))))).))))......))))))))..------((((....)))).. ( -28.50) >consensus AACCAAAACCCAAACCCAAAGCGAUACCGAA____UCCCAACUCCCAAUCGAAAA____GUUUUCGGGCUCGGGAAAAAAAGGGUUUGGCU______GUGAUAUUUCAUGU .........((((((((....((....))............(((....(((((((.....)))))))....))).......))))))))........((((....)))).. (-14.38 = -15.26 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:48 2006