| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,392,870 – 10,392,977 |
| Length | 107 |
| Max. P | 0.794394 |
| Location | 10,392,870 – 10,392,977 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 89.67 |
| Mean single sequence MFE | -23.03 |
| Consensus MFE | -19.11 |
| Energy contribution | -19.53 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.794394 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10392870 107 + 23771897 UUCAGUUUUGUUUUUUUUUCGCUUUCUACUUCGAGCUGCAGACACUUGAUGUCCUUACAUCUGCUUUACAACUUGGUCGCGUACUUUCAAUUACGCGCCUUCGUCCU-- ....................((((........))))....(((....(((((....))))).............((.((((((........))))))))...)))..-- ( -19.60) >DroSec_CAF1 264190 104 + 1 UUCAGUUU---UUUUUUUUCGCUCUCUACUUCGAGCGGCAGACACUUGAUGUCCUUACAUCUGCUUUACAACUUGGUCGCGUACUUUCAAUUACGCGCUUUCGUCCU-- ........---.......((((((........))))))..(((....(((((....))))).............((.((((((........))))))))...)))..-- ( -22.00) >DroSim_CAF1 276223 104 + 1 UUCAGUUU---UUUUUUUUCGCUCUCUACUUCGAGCGGCAGGCACUUGAUGUCCUUACAUCUGCUUUACAACUUGGUCGCGUACUUUCAAUUACGCGCCUUCGUCCU-- ...((((.---.......((((((........)))))).(((((...(((((....))))))))))...)))).((.((((((........))))))))........-- ( -25.20) >DroEre_CAF1 279824 99 + 1 UUCACUU--------UUUUCGCUCUCUACGUCGAGCGGCAGGCACUUGAUGUCCUUACAUCUGCUUUACAACUUGGUCGCGUACUUUCAAUUACGCGCCUUCGUCCU-- .......--------.....((((........))))((((((((...(((((....))))))))))........((.((((((........))))))))...)))..-- ( -25.20) >DroYak_CAF1 277138 105 + 1 UUCAGUUU----UUUUUUUCGCUCUCUACUUCGAGCGGCAGACACUUGAUGUCCUUACAACUGCUUUACAACGUGGUCGCGUACUUUCAAUUACGCGCCUUCGUCCUGU ..(((((.----......((((((........))))))..((((.....)))).....)))))....((((((.((.((((((........))))))))..)))..))) ( -25.90) >DroAna_CAF1 271654 102 + 1 UUCACUUA--UUUUUUUUUCGA---GGACUUGAAGCGGCAGACACUUGAUGUCCUUACAUCUGCUUUACAACUUGGUCGCGUACUUUCAAUUACGCGCAUUUGUUCC-- ........--..........((---((((.(.(((.(.....).))).).))))))(((..(((....(.....)...(((((........))))))))..)))...-- ( -20.30) >consensus UUCAGUUU___UUUUUUUUCGCUCUCUACUUCGAGCGGCAGACACUUGAUGUCCUUACAUCUGCUUUACAACUUGGUCGCGUACUUUCAAUUACGCGCCUUCGUCCU__ ..................((((((........))))))..(((....(((((....))))).............((.((((((........))))))))...))).... (-19.11 = -19.53 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:46 2006