| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,392,273 – 10,392,375 |
| Length | 102 |
| Max. P | 0.901016 |
| Location | 10,392,273 – 10,392,375 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 83.65 |
| Mean single sequence MFE | -20.10 |
| Consensus MFE | -13.75 |
| Energy contribution | -13.53 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.60 |
| Structure conservation index | 0.68 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.901016 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10392273 102 - 23771897 UAAACAGAGAUGAGGCCCAGAGCUUAAAGUUGGGCAGAGAAAAG---AGAGAAGAAAAGCGGAAGUUGAUAAAGAAAAUUCGAGUAAUUGAAAGCCAUCUGAAUA .......(((((..(((((..((.....))))))).........---..........(((....)))...........(((((....)))))...)))))..... ( -20.10) >DroEre_CAF1 279243 102 - 1 UAAAUAGAGUUGAGGCCCAGAGCUUAAAGUUGGGCCGAGAAAAG---AAAGAAGAAAAGCGCAAGUUGAUAAGGUAAAUUCAAGUAAUUGAAAGGUAUCUGGAUU .............((((((..((.....))))))))........---..........(((....)))....(((((..(((((....)))))...)))))..... ( -22.80) >DroYak_CAF1 276566 105 - 1 UAAAUAGAGAUGAGGCCCACAGCUUAAAGUUGGUCCCAGAAAAAAAGGAGGAAGAAAAGUGUAAGUUGAUAAGGCAAAUUUAAGUAAUUGAAUGCGAUCUGAAUU .......((((...(((..(((((((...((..((((..........).)))...))....)))))))....)))..((((((....))))))...))))..... ( -17.40) >consensus UAAAUAGAGAUGAGGCCCAGAGCUUAAAGUUGGGCCGAGAAAAG___AAAGAAGAAAAGCGCAAGUUGAUAAGGAAAAUUCAAGUAAUUGAAAGCCAUCUGAAUU ....((((.....((((((..((.....)))))))).....................(((....)))...........(((((....))))).....)))).... (-13.75 = -13.53 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:45 2006