| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,386,018 – 10,386,110 |
| Length | 92 |
| Max. P | 0.864164 |
| Location | 10,386,018 – 10,386,110 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 72.92 |
| Mean single sequence MFE | -14.72 |
| Consensus MFE | -8.72 |
| Energy contribution | -10.33 |
| Covariance contribution | 1.61 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.864164 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10386018 92 + 23771897 -----------GGAUCCUGGACGGGGAUCCUGCAUCUGCAUCUGCAUUAUGCACACUCAUUACCCUUACUCCAGA-UCGCUCUCUC--UCUCUCUCACUCAUUUUG -----------.((((.((((.((((....(((((.(((....)))..))))).........))))...))))))-))........--.................. ( -19.02) >DroSec_CAF1 259613 80 + 1 -----------GGACCCUGGACCGGGAUCCUGCAUCUGCAUCUGCAUUAUGCACACUCAUUACCCUUACUCCAUA-U--------------CUCUUACUCAUUUUG -----------((((((......))).)))(((((.(((....)))..)))))......................-.--------------............... ( -14.70) >DroSim_CAF1 270755 80 + 1 -----------GGAUUCUGGACCGGGAUCCUGCAUCUGCAUCUGCAUUAUGCACACUCAUUACCCUUACUCCAUA-U--------------CUCUCACUCAUUUUG -----------((((((((...))))))))(((((.(((....)))..)))))......................-.--------------............... ( -15.40) >DroEre_CAF1 275243 94 + 1 -----------GAAUCCUGGACCGGGAUCCUGCAUCUGCAUCUGCAUUAUGCACACUCAUUACCCUUACUCCAUA-UCGCUCCCUCUCCCUCUCUCUCUCAUUUUG -----------.......(((..((((...(((....)))..(((.....)))......................-....))))..)))................. ( -13.00) >DroWil_CAF1 414024 98 + 1 UUCUGGAUUCAGAAUCCUGGGCCCG----CUGCAUAUGUA--UGCAUUAUGCACACUCAUUAUCCGUACCAUAGUUUCGCUCUCUC--CCUCCCUCCCUCUAUCUC (((((....)))))....((((..(----.((((((((..--..)).)))))))....(((((.......)))))...))))....--.................. ( -12.80) >DroYak_CAF1 272567 82 + 1 -----------GGAUCCUGGACCGGGAUCCUGCAU------CUGCAUUAUCCACACUCAUUACCCGUACUCCUUA-UA--UACA----UAUAUCUCGCUCAUUUUG -----------((((((((...))))))))(((..------..))).............................-..--....----.................. ( -13.40) >consensus ___________GGAUCCUGGACCGGGAUCCUGCAUCUGCAUCUGCAUUAUGCACACUCAUUACCCUUACUCCAUA_UC__UC_C_____CUCUCUCACUCAUUUUG ...........(((((((.....)))))))(((((.(((....)))..)))))..................................................... ( -8.72 = -10.33 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:43 2006