| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,374,107 – 10,374,204 |
| Length | 97 |
| Max. P | 0.889871 |
| Location | 10,374,107 – 10,374,204 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 79.68 |
| Mean single sequence MFE | -23.08 |
| Consensus MFE | -11.79 |
| Energy contribution | -12.90 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.889871 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10374107 97 + 23771897 CG-----UUUCCAACUGCCAUUGACUUAUAUAAAUACAUUAAGUCACAAAUCACAAUUUCCCGAUGCUUGAAAUGAGCAAACGGAAGGCAUACAUUUUAAAU------------ ..-----........((((..(((((((...........)))))))...........((((...(((((.....)))))...))))))))............------------ ( -20.40) >DroVir_CAF1 288197 104 + 1 C---------CGAGCU-ACAUUGACUUGUAUAAAUACAUUAAGUCACAAAUCACAAUUUUCCGAUGCUUGAAAUGCGCAAACGGAAGGCAUACAUUUUAAAUGUGUGCACAAGC .---------...(((-....(((((((...........)))))))...........((((((.(((.........)))..))))))((((((((.....))))))))...))) ( -23.70) >DroGri_CAF1 266923 101 + 1 C------------GCC-ACAUUGACUUAUAUAAAUACAUUAAGUCACAAAUCACAAUUUUCCGACGCUUGAAAUGAGCAAACGGAAGGCAUACAUUUUAAAUGUGUGCGCAAGC .------------(((-....(((((((...........)))))))............(((((..((((.....))))...))))))))((((((.....))))))((....)) ( -26.80) >DroWil_CAF1 393265 97 + 1 GG-----UUUG-GU---CUGUCUCCUUGUAUAAAUACAUUAAGUCACAAAUCACAAUUUUCCGAUGCUUGAAAUGAGCAAACGGAAGGCAUACAUUUUAAACGUGG-------- ((-----((((-..---.((.((...((((....))))...)).))))))))....(((((((.(((((.....)))))..)))))))..................-------- ( -18.50) >DroMoj_CAF1 326335 100 + 1 C------------GCC-GCAUUGACUUAUAUAAAUACAUUAAGUCACAAAUCACAAUU-UCCGAUGCUUGAAAUGCGCAAACGGAAGGCAUACAUUUUAAAUGUGUGCACAGGC .------------(((-....(((((((...........)))))))..........((-((((.(((.........)))..))))))((((((((.....))))))))...))) ( -26.80) >DroAna_CAF1 254560 102 + 1 UGCCAACUGUCCAACUGCCAUUGACUUAUAUAAAUACAUUAAGUCACAAAUCACAAUUUUCCGAUGCUUGAAAUGAGCAAACGGAAGGCAUACAUUUUAAAA------------ ...............((((..(((((((...........)))))))............(((((.(((((.....)))))..)))))))))............------------ ( -22.30) >consensus C_________C_AGCU_CCAUUGACUUAUAUAAAUACAUUAAGUCACAAAUCACAAUUUUCCGAUGCUUGAAAUGAGCAAACGGAAGGCAUACAUUUUAAAUGUGU________ .....................(((((((...........)))))))..........(((((((.(((((.....)))))..))))))).......................... (-11.79 = -12.90 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:38 2006