| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,026,041 – 1,026,134 |
| Length | 93 |
| Max. P | 0.774998 |
| Location | 1,026,041 – 1,026,134 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 79.90 |
| Mean single sequence MFE | -28.85 |
| Consensus MFE | -15.71 |
| Energy contribution | -16.77 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.774998 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1026041 93 + 23771897 CUGAUGCGGGUCCGUCUAUAUG--------UCUAUAUGUCCAUGUGUCCAUAUGUCUAUAUGGAAUAUCUGAGCACCGCAGAAUUGGGCACCC-CGCCC----AC-A ....((((((..((...((((.--------((((((((..(((((....)))))..)))))))))))).))..).)))))....(((((....-.))))----).-. ( -30.00) >DroSec_CAF1 8694 101 + 1 CUGAUGCGGGUCCGUCUAUUUGUCCAUGUGUCCAUAUGUCCAUAUGUCCAUAUGUCUAUAUGGAAUAUCUGAGCACCGCAGCAUUGGGCACCC-CGCCC----AC-A .((.((((((..((..(((...((((((((..((((((..(....)..))))))..)))))))))))..))..).))))).)).(((((....-.))))----).-. ( -36.10) >DroEre_CAF1 11319 91 + 1 CUGAUGCGGGCCCGUCUAUAUG--------UCCAUGUG--------UCCAUGUGUCUAUAUGGAAUAUCUGAACACCGCAAAGUUGUGCCCCUGCACCCCAUCACCC .((((((((.....((.((((.--------((((((((--------..(....)..))))))))))))..))...))))......((((....))))...))))... ( -23.10) >DroYak_CAF1 9246 94 + 1 CUGAUGCGGGCCCGUCUAUAUG--------UCCAUAUGUCCAUUUGUCCAUAUGUCUAUAUGGAAUAUCUGAACACCGCAGCGUUGUGCCCCC-CACCC----ACGC ....(((((.....((((((((--------..((((((..(....)..))))))..))))))))...........)))))((((.(((.....-)))..----)))) ( -26.19) >consensus CUGAUGCGGGCCCGUCUAUAUG________UCCAUAUGUCCAU_UGUCCAUAUGUCUAUAUGGAAUAUCUGAACACCGCAGAAUUGGGCACCC_CACCC____AC_A ....((((((..((..(((...........((((((((..(((((....)))))..)))))))))))..))..).)))))........................... (-15.71 = -16.77 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:53 2006