Locus 3536

Sequence ID 3L_DroMel_CAF1
Location 10,363,368 – 10,363,476
Length 108
Max. P 0.738831
window5518

overview

Window 8

Location 10,363,368 – 10,363,476
Length 108
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 79.60
Mean single sequence MFE -27.83
Consensus MFE -16.25
Energy contribution -17.00
Covariance contribution 0.75
Combinations/Pair 1.09
Mean z-score -1.92
Structure conservation index 0.58
SVM decision value 0.44
SVM RNA-class probability 0.738831
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10363368 108 - 23771897
GCCA--GUUGCAUAAACAUGGCAAAGAAAUUGUCAUGAUCAAAAUGUGAUAUUAAACGUGGC---GGCUUGCCGCAGAGCCAAAGCCAUAGUGGCUGUUUUUUUUACACUUAA
..((--((..(.....((((((((.....))))))))((((.....)))).......(((((---(((((......)))))...))))).)..))))................ ( -30.90)
>DroPse_CAF1 258875 94 - 1
GGCAACGUUGCAUAAACAUGGCAAAGAAAUUGUCAUGAUCAAAAUGUGAUAUUAAACGUGGCGGCGGCUUGCCACAGAG--AGAGGCAGAGACCCG-----------------
((((.((((((.....((((((((.....))))))))......((((........)))).))))))...))))......--.(.((......))).----------------- ( -25.80)
>DroEre_CAF1 251596 104 - 1
GCCA--GUUGCAUAAA-AUGGCAAAGAAAUUGUCAUGAUCAAAAUGUGUUAUUAAACGUGGC---GGCCUGACGCAGAACCGCAGCCAAUGUGGCUGAU---UUUACACUUAA
..((--((..(((...-.((((.........((((.(..(...((((........))))...---)..)))))((......)).)))))))..))))..---........... ( -25.70)
>DroYak_CAF1 249223 104 - 1
GCCA--GUUGCAUAAA-AUGGCAAAGAAAUUGUCAUGAUCAAAAUGUGAUAUUAAACGUGGC---GGCUUGACGCAGAGCCGCAGCCACUGCGGCUGUU---UUUACACUUAA
..((--((((((....-.((((........((((((.........)))))).........((---(((((......))))))).)))).))))))))..---........... ( -31.60)
>DroAna_CAF1 243718 105 - 1
GCCA--GUUGCAUAAACAUGGCAAAGAAAUUGUCAUGAUCAAAAUGUGAUAUUAAACGUGGC---GGCUUGCCACAGAGCCAAAAGCAAAGUGCCAGGU---UUUACACUUAA
((((--(((.......((((((((.....))))))))((((.....))))....))).))))---(((((......))))).......(((((......---....))))).. ( -27.20)
>DroPer_CAF1 242019 94 - 1
GGCAACGUUGCAUAAACAUGGCAAAGAAAUUGUCAUGAUCAAAAUGUGAUAUUAAACGUGGCGGCGGCUUGCCACAGAG--AGAGGCAGAGACCCG-----------------
((((.((((((.....((((((((.....))))))))......((((........)))).))))))...))))......--.(.((......))).----------------- ( -25.80)
>consensus
GCCA__GUUGCAUAAACAUGGCAAAGAAAUUGUCAUGAUCAAAAUGUGAUAUUAAACGUGGC___GGCUUGCCACAGAGCCAAAGCCAAAGUGCCUG_U___UUUACACUUAA
(((...(((((((...((((((((.....))))))))......))))))).......(((((........))))).................))).................. (-16.25 = -17.00 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:28 2006