Locus 3533

Sequence ID 3L_DroMel_CAF1
Location 10,358,086 – 10,358,181
Length 95
Max. P 0.591561
window5512

overview

Window 2

Location 10,358,086 – 10,358,181
Length 95
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 87.18
Mean single sequence MFE -22.88
Consensus MFE -18.32
Energy contribution -19.15
Covariance contribution 0.83
Combinations/Pair 1.12
Mean z-score -2.01
Structure conservation index 0.80
SVM decision value 0.12
SVM RNA-class probability 0.591561
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10358086 95 - 23771897
AAAGCGAUUCGUUGCCUUUUUUGUGCCAAAAACGGGUGCCGUUGUUGUUUUGCAAAAUUAAAACAGCAAUUAAAUGGCCAAAAGCCAAACCGUAA-------------
...(((...((..((((.((((......)))).))))..))(((((((((((......))))))))))).....((((.....))))...)))..------------- ( -23.40)
>DroSec_CAF1 231805 95 - 1
AAAGCGAUUCGUUGCCUUUUUUGUGCCAAAAACGGGUGCCGGUGUGGUUUUGCAAAAUUAAAACAGCAAUUAAAUGGCCAAAAGCCAAACCGUAA-------------
...(((....((((....((((((((((...((.(....).)).))))...))))))......)))).......((((.....))))...)))..------------- ( -20.70)
>DroSim_CAF1 242116 95 - 1
AAAGCGAUUCGUUGCCUUUUUUGUGCCAAAAACGGGUGCCGGUGUUGUUUUGCAAAAUUAAAACAGCAAUUAAAUGGCCAAAAGCCAAACCGUAA-------------
...((.((((((((((......).))....)))))))))(((((((((((((......))))))))).......((((.....)))).))))...------------- ( -24.10)
>DroEre_CAF1 246250 95 - 1
AAAGCGAUUCGUUGCCUUUUUUGUGCCAAAAACGGGUGCUGGUGUUGUUUUGCAAAAUUAAAACAGCAAUUAAAUGGCCAAAAGCCAAACCGAAA-------------
..(((.((((((((((......).))....))))))))))((((((((((((......))))))))).......((((.....)))).)))....------------- ( -24.10)
>DroYak_CAF1 243800 95 - 1
AAAGCGAUUCGUUGCCUUUUUUGUGCCAAAAACGGGUGCCGAUGUUGUUUUGCAAAAUUAAAACAGCAAUUAAAUGGCCAAAAGCCAAACCGAAA-------------
....((..(((..((((.((((......)))).))))..)))((((((((((......))))))))))......((((.....))))...))...------------- ( -23.10)
>DroAna_CAF1 238181 97 - 1
CAAGCCA----------GUUUUCUACCAA-AACGGGUGCUGGUGUUGUUUUGCAAAAUUAAAACAGCAAUUAAAUGGCCAGAAGCCAAACCAACAACAAUAAAAACAA
...((((----------((.....(((..-....)))))))))(((((((((......))))))))).......((((.....))))..................... ( -21.90)
>consensus
AAAGCGAUUCGUUGCCUUUUUUGUGCCAAAAACGGGUGCCGGUGUUGUUUUGCAAAAUUAAAACAGCAAUUAAAUGGCCAAAAGCCAAACCGAAA_____________
...((((....)))).......(((((.......)))))(((((((((((((......))))))))).......((((.....)))).))))................ (-18.32 = -19.15 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:23 2006