Locus 3532

Sequence ID 3L_DroMel_CAF1
Location 10,355,641 – 10,355,741
Length 100
Max. P 0.566887
window5511

overview

Window 1

Location 10,355,641 – 10,355,741
Length 100
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 81.50
Mean single sequence MFE -32.34
Consensus MFE -19.53
Energy contribution -19.86
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.04
Structure conservation index 0.60
SVM decision value 0.07
SVM RNA-class probability 0.566887
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10355641 100 - 23771897
GGUGUGGCUAA-AGGGGGUUAGGCACAA--CAUGGGUGGCCAAUUGCAAAAAAAAA-----GGGGUGAUGGGGAGACCCCCUGGGUUGCAGGGGGGACCAGUGGCGCA
.((((.(((..-((((((((.(((...(--(....)).))).((..(.........-----...)..)).....)))))))).((((.(....).))))))).)))). ( -35.10)
>DroSec_CAF1 229459 103 - 1
GGUGUGGCAAAAAGGGGGUUAGGCACUACACAUGGGUGGCCAAUUGCAAAAAAAAAUGGUGGGGGUGAUGGGGUGUGCC-----GUUGCAGGGGGGACCAGUGGCGCA
.((((.((.........((..(((((..(((....)))(((.((..(.................)..))..))))))))-----...))..((....)).)).)))). ( -30.13)
>DroSim_CAF1 239516 97 - 1
GGUGUGGCAACAUUGGGGUUAGGCACUACACAUGGGUGGCCAAUUGCAAAA--AAAUGGAGGGGG----GCGAUGUGCC-----GUUGCAGGGGGGACCAGUGGCGCA
.((((.((.........((..(((((..(((....)))(((..((.((...--...)).))...)----))...)))))-----...))..((....)).)).)))). ( -31.80)
>consensus
GGUGUGGCAAAAAGGGGGUUAGGCACUACACAUGGGUGGCCAAUUGCAAAAAAAAAUGG_GGGGGUGAUGGGGUGUGCC_____GUUGCAGGGGGGACCAGUGGCGCA
.((((.((.............((((((.......))).)))..((((((.............((.............))......))))))((....)).)).)))). (-19.53 = -19.86 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:22 2006