Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,354,941 – 10,355,059 |
Length | 118 |
Max. P | 0.969234 |
Location | 10,354,941 – 10,355,059 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 94.73 |
Mean single sequence MFE | -26.40 |
Consensus MFE | -25.57 |
Energy contribution | -25.93 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.03 |
Mean z-score | -1.25 |
Structure conservation index | 0.97 |
SVM decision value | 1.64 |
SVM RNA-class probability | 0.969234 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10354941 118 - 23771897 CAAACAUUUGCAUUGGCCAUUCUCGGUCAAUAUAGACAGAUUUCCAUGCAAAUUUAAUACGCAAACAUUUCGGGCCGAGCCCUAGCCAAAUUGAAAAUCUCAUCUGGGCAAAGUGGCU .....((((((((.((....(((..(((......))))))...))))))))))......(((.........((((...))))..(((....(((.....)))....)))...)))... ( -27.90) >DroVir_CAF1 268928 116 - 1 CAAACAUUUGCAUUGGCCAUUCUCGGUCAAUAUAGACAGAUUUCCAUGCAAAUUUAAUACGCAAACAUUCGGGGC--GGCCCUAGUCAAAUUGAAAAUCUCAUCUGUGCAAAGUGGCC ....((((((((((((((......)))))))(((((.((((((.(((((...........))).......(((..--..))).........)).))))))..))))))).)))))... ( -26.20) >DroGri_CAF1 249061 116 - 1 CAAACAUUUGCAUUGGCCAUUCUCGGUCAAUAUAGACAGAUUUCCAUGCAAAUUUAAUACGCAAACAUUCGGGGC--GGCCCUAUCCAAAUUGAAAAUCUCAUCUGUGCAAAGUGGCC ....((((((((((((((......)))))))(((((.((((((.(((((...........))).......(((..--..))).........)).))))))..))))))).)))))... ( -26.20) >DroWil_CAF1 362131 116 - 1 CAAACAUUUGCAUUGGCCAUUCUCGGUCAAUAUAGACAGAUUUCCAUGCAAAUUUAAUACGCAAACAUUU-GGGCCG-GCCCUAGCCAAAUUGAAAAUCUCAUCUGGGCAAAGUGGCU ((((..((((((((((((......)))))))......((((((......)))))).....)))))..)))-)....(-(((((.(((....(((.....)))....)))..)).)))) ( -27.50) >DroMoj_CAF1 303226 115 - 1 CAAACAUUUGCAUUGGCCAUUCUCGGUCAAUAUAGACAGAUUUCCAUGCAAAUUUAAUACGCAAACAUUCG-GGC--GGCCCUAGUCAAAUUGAAAAUCUCAUCUGUGCAAAGUGGCU ....((((((((((((((......)))))))(((((.((((((.(((((...........))).......(-((.--..))).........)).))))))..))))))).)))))... ( -24.70) >DroAna_CAF1 234075 118 - 1 CAAACAUUUGCAUUGGCCAUUCUCGGUCAAUAUAGACAGAUUUCCAUGCAAAUUUAAUACGCAAACAUUUCGGGCCAGGCCCUAGCCAAAUUGAAAAUCUCAUCUGUGUAAAGUGACU ...((.((((((((((((......)))))))(((((.((((((.(((((...........)))........((((...)))).........)).))))))..)))))))))))).... ( -25.90) >consensus CAAACAUUUGCAUUGGCCAUUCUCGGUCAAUAUAGACAGAUUUCCAUGCAAAUUUAAUACGCAAACAUUCGGGGC__GGCCCUAGCCAAAUUGAAAAUCUCAUCUGUGCAAAGUGGCU ....((((((((((((((......)))))))(((((.((((((.(((((...........)))........((((...)))).........)).))))))..))))))).)))))... (-25.57 = -25.93 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:21 2006