| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,023,676 – 1,023,784 |
| Length | 108 |
| Max. P | 0.505741 |
| Location | 1,023,676 – 1,023,784 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 76.92 |
| Mean single sequence MFE | -22.86 |
| Consensus MFE | -16.97 |
| Energy contribution | -16.33 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.505741 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1023676 108 - 23771897 UCGGCCUCUUCC----AUAUCU-UG--A----UCUUUCAGCAGACAGCUACCAGUACCAGCUGCAGUCCAUGUGGCAAAAGUGCUGGAACACCAACCAGAAUCUGAUGCAUCACAUGCG ((((..(((...----......-..--.----......(((.....))).(((((((..((..((.....))..))....)))))))..........)))..)))).((((...)))). ( -25.20) >DroVir_CAF1 10131 103 - 1 UUAUGUUUUGUUUGCCA----------------CCUCCAGCAGACAGCUAUCAAUAUCAGCUGCAGUCGAUGUGGCAAAAAUGCUGGAACACCAAUCAGAAUCUGAUGCAUCAUAUGCG .((((.....(((((((----------------(.((..((.(.(((((.........)))))).)).)).)))))))).(((((((....)))(((((...))))))))))))).... ( -26.10) >DroPse_CAF1 8305 105 - 1 ----CCUUUCCA----C--UCG-UGUGA--C-CCUUCCAGCAGACAGCUACCAGUACCAGCUUCAGUCCAUGUGGCAAAAGUGCUGGAACACCAAUCAGAAUCUGAUGCAUCACAUGCG ----........----.--.((-(((((--.-..((((((((((.((((.........)))))).(((.....))).....)))))))).....(((((...)))))...))))))).. ( -26.60) >DroGri_CAF1 7614 107 - 1 UUAUCUUCUCUU----C--UCUUCG--C----ACUUCCAGCAGACAGCUAUCAGUAUCAACUGCAGUCGAUGUGGCAAAAAUGCUGGAACACCAAUCAGAAUCUAAUGCAUCAUAUGCG ..........((----(--(.....--.----..((((((((....(((((((((....))))........))))).....))))))))........))))......((((...)))). ( -21.09) >DroWil_CAF1 7045 108 - 1 UU--UCUUUCCU----U--UCU-UA--AACCACUUUUCAGCAGAUAGCUAUCAAUAUCAAUUGCAAUCGAUGUGGCAAAAAUGCUGGAACACCAAUCAAAAUCUAAUGCAUCAUAUGCG ..--........----.--...-..--.......((((((((((((........))))..((((..........))))...))))))))..................((((...)))). ( -15.80) >DroAna_CAF1 4671 101 - 1 -----AUAUAUG----U--UUU-UG--A----UCCUCCAGCAGACAGCUACCAGUACCAGUUGCAGUCCAUGUGGCAAAAGUGCUGGAACACCAACCAGAACCUGAUGCAUCAUAUGCG -----.((((((----.--...-((--(----((....(((.....))).(((((((..((..((.....))..))....))))))).................))).)).)))))).. ( -22.40) >consensus UU__CCUUUCCU____A__UCU_UG__A____CCUUCCAGCAGACAGCUACCAGUACCAGCUGCAGUCCAUGUGGCAAAAAUGCUGGAACACCAAUCAGAAUCUGAUGCAUCAUAUGCG ...................................(((((((....(((((((((....))))........))))).....)))))))...................((((...)))). (-16.97 = -16.33 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:52 2006