| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,351,761 – 10,351,869 |
| Length | 108 |
| Max. P | 0.817255 |
| Location | 10,351,761 – 10,351,869 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 95.68 |
| Mean single sequence MFE | -17.64 |
| Consensus MFE | -17.41 |
| Energy contribution | -17.41 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.99 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.817255 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10351761 108 - 23771897 UUUUCACAUCAUUUGGCCAACGCAACCAUCUGCAUUUGGCUUUAAUCCCCUUUCCCCCUUUAGGCCACAAAAAUUAAAAAAAAAAAAACCAAUGAGUUGGUAGCCAAA ...........((((((....(((......)))...((((((...................))))))....................(((((....))))).)))))) ( -18.31) >DroSec_CAF1 225617 108 - 1 UUUUCACAUCAUUUGGCCAACGCACCCAGCUGCAUUUGGCUUUAAUCCCCUCUCCUCCUUUAGGCCACAAAAAUUAAAAUAAAAAAACCCAAUGAGUUGGUAGCCAAA ...........(((((((((((((......)))...((((((...................))))))............................))))...)))))) ( -17.31) >DroSim_CAF1 235700 108 - 1 UUUUCACAUCAUUUGGCCAACGCACCCAGCUGCAUUUGGCUUUAAUCCCCUUUCCCCCUUUAGGCCACAAAAAUUACAAAAAAAAAACCCAAUGAGUUGGUAGCCAAA ...........(((((((((((((......)))...((((((...................))))))............................))))...)))))) ( -17.31) >consensus UUUUCACAUCAUUUGGCCAACGCACCCAGCUGCAUUUGGCUUUAAUCCCCUUUCCCCCUUUAGGCCACAAAAAUUAAAAAAAAAAAACCCAAUGAGUUGGUAGCCAAA ...........(((((((((((((......)))...((((((...................))))))............................))))...)))))) (-17.41 = -17.41 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:18 2006