Locus 3528

Sequence ID 3L_DroMel_CAF1
Location 10,350,805 – 10,350,900
Length 95
Max. P 0.558050
window5506

overview

Window 6

Location 10,350,805 – 10,350,900
Length 95
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 72.00
Mean single sequence MFE -11.42
Consensus MFE -0.90
Energy contribution -0.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.08
SVM decision value 0.05
SVM RNA-class probability 0.558050
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10350805 95 - 23771897
ACUCUCCAAAAAUCUAAACGCGACUGCACUGCAAGAAAAUUGCACUUAAAAUUGCAGGAAACCAUUCAUUCAC-----AAGU-AGGAAAACUUAUUAACGA
....(((................(((((.(((((.....)))))........)))))(((....)))......-----....-.))).............. ( -11.80)
>DroSec_CAF1 224683 83 - 1
ACUCUCCAAAAAUCUAAACGCGACUGCACUUCAAGAAAAUUGACCUUAAAAGUGC------------AUUCGC-----AAGU-AGGAAAACUUAUAAACGA
............((((...((((.((((((((((.....)))).......)))))------------).))))-----...)-)))............... ( -17.61)
>DroSim_CAF1 234763 83 - 1
ACUCUCCAAAAAUCUAAACGCGAAUGCACUUCAAGAAAAUUAAGCUUAAAAUUGC------------AUUCGC-----AAGU-AGGAAAACUUAAAAACGA
............((((...(((((((((....(((.........))).....)))------------))))))-----...)-)))............... ( -15.30)
>DroEre_CAF1 238718 87 - 1
ACUCUCCUCAAAUCUAAACGCGACUGCACUCCACGAAAAUGGCCUUUAAAAUUUAAGGAAACC----AUUCAAACCAUAAGCUAAAAA----------AAA
...................((....))..........(((((((((........))))...))----)))..................----------... (  -6.50)
>DroYak_CAF1 236231 81 - 1
ACUCUCCAAAAAUCUAAACGCGACUGCACUCCACGAAAAUUGCCUUUAAAAUUGCAGAAAACC----AUUCAC-----AAGU-AGUAA----------UAG
......................(((((.............(((..........)))(((....----.)))..-----..))-)))..----------... (  -5.90)
>consensus
ACUCUCCAAAAAUCUAAACGCGACUGCACUCCAAGAAAAUUGCCCUUAAAAUUGCAG_AAACC____AUUCAC_____AAGU_AGGAAAACUUA__AACGA
...................((....)).......................................................................... ( -0.90 =  -0.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:17 2006