| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,344,367 – 10,344,459 |
| Length | 92 |
| Max. P | 0.578325 |
| Location | 10,344,367 – 10,344,459 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 78.59 |
| Mean single sequence MFE | -34.02 |
| Consensus MFE | -9.36 |
| Energy contribution | -9.75 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.01 |
| Structure conservation index | 0.28 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.578325 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10344367 92 - 23771897 UUCAUCG----AUCGUAUAGAUUCGAGCAUAGAUCGGUUAUAUGGUGUCUAU-----AUGGUCG------------GUGGAGUGAUAAGCCCUGCUUUUCUGCUUUUGGCAUG (((((((----(((((((((((...(.((((.........)))).)))))))-----)))))))------------))))).......(((..((......))....)))... ( -30.50) >DroSec_CAF1 218230 92 - 1 UCCAUCG----AUCGUAUAGAUCCGAGCAUAGAUCGCUUAUAUGGGGUCUAU-----AUGGUCG------------GUGGAGUGAUAAGCCCUGCUUUUCUGCUUUUGGCAUG (((((((----(((((((((((((((((.......)))).....))))))))-----)))))))------------))))).......(((..((......))....)))... ( -40.10) >DroSim_CAF1 224155 92 - 1 UCCAUCG----AUCGUAUAGAUCCGAGCAUAGAUCGCUUAUAUGGGGUCUAU-----AUGGUCG------------GUGGAGUGAUAAGCCCUGCUUUUCUGCUUUUGGCAUG (((((((----(((((((((((((((((.......)))).....))))))))-----)))))))------------))))).......(((..((......))....)))... ( -40.10) >DroEre_CAF1 231273 88 - 1 CCG--------AUCGUAUAGAUCCGAGCAUAGAUCGCUUAUAUGGUCUCUAU-----AUGGUCG------------GCGGAGUGAUAAGCCCUGCUUUUCUGCUUUUGGCAUG (((--------((((((((((.((((((.......))))....))..)))))-----)))))))------------)...........(((..((......))....)))... ( -27.80) >DroYak_CAF1 229128 104 - 1 UCGAUCG----AUCGUAUAGAUCCAAGCAUAGAUCGCUUAUAUGGUCUCUAU-----AUGGUCGAUGAUGGUGGUGGUGGAGUGAUAAGCCCUGCUUUUCUGCUUUUGGCAUG ...((((----((((((((((.((((((.......)))....)))..)))))-----)))))))))((.((..(.(((..(....)..))))..))..))(((.....))).. ( -33.10) >DroAna_CAF1 224639 90 - 1 UCGAUCGAUGGAUUGCUUCGAUCGGGGC---GAUCGCUUAUAUGGUGGCUAGGCACUGGGGUUG------------CC-GGCUGAUAAGCCCUG-------GCUUUUGGCUCG ((((((((.........))))))))(((---((((.(......((((......))))).)))))------------))-(((..(.((((....-------)))))..))).. ( -32.50) >consensus UCCAUCG____AUCGUAUAGAUCCGAGCAUAGAUCGCUUAUAUGGUGUCUAU_____AUGGUCG____________GUGGAGUGAUAAGCCCUGCUUUUCUGCUUUUGGCAUG ............(((((((((((........))))...)))))))...........................................(((..((......))....)))... ( -9.36 = -9.75 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:14 2006