Locus 3525

Sequence ID 3L_DroMel_CAF1
Location 10,342,352 – 10,342,468
Length 116
Max. P 0.992544
window5502

overview

Window 2

Location 10,342,352 – 10,342,468
Length 116
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 84.06
Mean single sequence MFE -33.55
Consensus MFE -23.96
Energy contribution -25.15
Covariance contribution 1.19
Combinations/Pair 1.24
Mean z-score -3.20
Structure conservation index 0.71
SVM decision value 2.34
SVM RNA-class probability 0.992544
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10342352 116 + 23771897
-AGGCAAGUGGAAAAGUUG-GCUGAUGAAAUCGGAUGUCAGCUAACGGACCACUAAAUAUUUGCUGGUGUGAGGUUUUUUUCUUUUAUCAGUAAAUAGUUUCCUAAUUUCAGUUUUAA--
-(((..(((((....((((-((((((..........))))))))))...)))))...((((((((((((.((((......)))).))))))))))))....)))..............-- ( -37.20)
>DroSec_CAF1 216154 115 + 1
-AGGAAAGUGGAGAAGUUG-ACUGAUAAAAUCGGAUGUCAGCUAACGGACCACUAAAUGUUUGCUGGUGUGAGGCUU-UUUCUUUUAUCAGUAAAUAGUUUCUUAAUUUUGGUUUUAA--
-((((((((((....((((-.((((((........)))))).))))...)))))...((((((((((((.((((...-..)))).))))))))))))..)))))..............-- ( -31.60)
>DroEre_CAF1 229321 118 + 1
-AGGAAAGUAGAGAAGUUGGGCUGAUAAAAUCGGAUGUUUGCUAACGGACUAUUAAAUGUUUGGUGGCGUGAGGUUU-UUUGUUUUAUCAGCUAAUAGUUUCCUAAUUUGCUUUAUAAUA
-((((((.((.........((((((((((((.((((.(((((((.(((((........))))).))))).)).))))-...))))))))))))..)).))))))................ ( -31.40)
>DroYak_CAF1 227183 118 + 1
GAGGAAAGUGGUAAAGUUG-GCUGAUAAAAUCGUGUGUUAGCUAACGGACUACUAAAUGUUUGCUGGUGUGAGGUUU-UUGGGUUUAUCGGUUAAUAGUUUCCCAAUUUGCUUUAUAACA
......((((((...((((-(((((((........)))))))))))..))))))...........(.((((((((..-(((((.((((......))))...)))))...)))))))).). ( -34.00)
>consensus
_AGGAAAGUGGAAAAGUUG_GCUGAUAAAAUCGGAUGUCAGCUAACGGACCACUAAAUGUUUGCUGGUGUGAGGUUU_UUUCUUUUAUCAGUAAAUAGUUUCCUAAUUUGCGUUAUAA__
.((((((((((....((((.(((((((........)))))))))))...)))))...((((((((((((.((((......)))).))))))))))))..)))))................ (-23.96 = -25.15 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:13 2006