Locus 3523

Sequence ID 3L_DroMel_CAF1
Location 10,338,836 – 10,338,934
Length 98
Max. P 0.999974
window5499

overview

Window 9

Location 10,338,836 – 10,338,934
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 96.08
Mean single sequence MFE -20.14
Consensus MFE -19.08
Energy contribution -19.68
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -3.44
Structure conservation index 0.95
SVM decision value 5.11
SVM RNA-class probability 0.999974
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10338836 98 + 23771897
AAAAAACAACACUGAAAAAGCUGCCAAGCGAGAAACGACGGAGGACCAUACCAUAUAUAACCCCUAUAUAUAACCGUCGUCGUCAUCAUCAUCAUCAA
............(((....(((....)))((((.(((((((.((......))(((((((.....)))))))..)))))))..)).)).......))). ( -21.50)
>DroSec_CAF1 212768 96 + 1
--AAAACAACACUGAAAAAGCUGCCAAGCGAGAAACGACGUAGGACCAUACCAUAUAUAACCCCUAUAUAUAACCGUCGUCGUCAUCAUCAUCAUCAA
--..........(((....(((....)))((((.((((((..((......))(((((((.....)))))))...))))))..)).)).......))). ( -17.50)
>DroSim_CAF1 219942 97 + 1
-AAAAACAACACUGAAAAAGCUGCCAAGCGAGAAACGACGGAGGACCAUACCAUAUAUAACCCCUAUAUAUAACCGUCGUCGUCAUCAUCAUCAUCAA
-...........(((....(((....)))((((.(((((((.((......))(((((((.....)))))))..)))))))..)).)).......))). ( -21.50)
>DroEre_CAF1 225880 95 + 1
---AAACAACACUGAAAAAGCUGCCAAGCGAGAAACGACGGAGGACCAUACCAUAUAUAACCCUCAUAUAUAACCGUCGUCGUCAUCAUCAUCAUCAA
---.........(((....(((....)))((((.(((((((.((......)).((((((.......)))))).)))))))..)).)).......))). ( -20.00)
>DroYak_CAF1 223759 94 + 1
---AAACAACA-UGAAAAAGCUGCCAAGCGAGAAACGACGGAGGACCAUACCAUAUAUAACCCCCAUAUAUAACCGUCGUCGUCAUCAUCAACAUCAA
---........-(((....(((....)))((((.(((((((.((......)).((((((.......)))))).)))))))..)).)).)))....... ( -20.20)
>consensus
__AAAACAACACUGAAAAAGCUGCCAAGCGAGAAACGACGGAGGACCAUACCAUAUAUAACCCCUAUAUAUAACCGUCGUCGUCAUCAUCAUCAUCAA
............(((....(((....)))((((.(((((((.((......))(((((((.....)))))))..)))))))..)).)).......))). (-19.08 = -19.68 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:10 2006