Locus 3522

Sequence ID 3L_DroMel_CAF1
Location 10,334,894 – 10,334,984
Length 90
Max. P 0.999539
window5498

overview

Window 8

Location 10,334,894 – 10,334,984
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 99.11
Mean single sequence MFE -18.30
Consensus MFE -18.22
Energy contribution -18.22
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.54
Structure conservation index 1.00
SVM decision value 3.70
SVM RNA-class probability 0.999539
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10334894 90 - 23771897
GGUUCUUCCAAGAGCCUCAUGAAUUUCAAUGAAAUUUAUGACAAUAAAUCAGCUGAGCCCAAAACUGAAACGAACCCAAAGUUUAACCAA
((((((....))))))(((((((((((...))))))))))).......((((.(........).))))...((((.....))))...... ( -17.50)
>DroSec_CAF1 208956 90 - 1
GGUUCUUCCAAGAGCCUCAUGAAUUUCAAUGAAAUUUAUGACAAUAAAUCAGCUGGGCCCAAAACUGAAACGAACCCAAAGUCUAACCAA
((((((....))))))(((((((((((...))))))))))).......((((.((....))...))))...................... ( -18.50)
>DroSim_CAF1 216083 90 - 1
GGUUCUUCCAAGAGCCUCAUGAAUUUCAAUGAAAUUUAUGACAAUAAAUCAGCUGGGCCCAAAACUGAAACGAACCCAAAGUCUAACCAA
((((((....))))))(((((((((((...))))))))))).......((((.((....))...))))...................... ( -18.50)
>DroEre_CAF1 221187 90 - 1
GGUUCUUCCAAGAGCCUCAUGAAUUUCAAUGAAAUUUAUGACAAUAAAUCAGCUGGGCCCAAAACUGAAACGAACCCAAAGUCUAACCAA
((((((....))))))(((((((((((...))))))))))).......((((.((....))...))))...................... ( -18.50)
>DroYak_CAF1 219041 90 - 1
GGUUCUUCCAAGAGCCUCAUGAAUUUCAAUGAAAUUUAUGACAAUAAAUCAGCUGGGCCCAAAACUGAAACGAACCCAAAGUCUAACCAA
((((((....))))))(((((((((((...))))))))))).......((((.((....))...))))...................... ( -18.50)
>consensus
GGUUCUUCCAAGAGCCUCAUGAAUUUCAAUGAAAUUUAUGACAAUAAAUCAGCUGGGCCCAAAACUGAAACGAACCCAAAGUCUAACCAA
((((((....))))))(((((((((((...))))))))))).......((((.((....))...))))...................... (-18.22 = -18.22 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:09 2006