Locus 3521

Sequence ID 3L_DroMel_CAF1
Location 10,329,392 – 10,329,490
Length 98
Max. P 0.705715
window5497

overview

Window 7

Location 10,329,392 – 10,329,490
Length 98
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 75.57
Mean single sequence MFE -20.50
Consensus MFE -9.64
Energy contribution -10.36
Covariance contribution 0.72
Combinations/Pair 1.22
Mean z-score -1.87
Structure conservation index 0.47
SVM decision value 0.36
SVM RNA-class probability 0.705715
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10329392 98 + 23771897
-AUUUAACUA----AAA-----AC-UGGGGAAAAAUCUUCCCAUUCAAACGGAUGGCACAAAGUUUUUGCCCCUAACUGUGUUUUCAUAUCUGAUCCAUAUUUCCCAAC
-.........----...-----..-.(((((((((.(((.((((((....))))))....)))))))).))))....((((...(((....)))..))))......... ( -17.50)
>DroSec_CAF1 203710 94 + 1
GGAUUACCUA------------GC-UAGGGAAUAAUCUUCCCAUUCAAAUGGAUGGCACACAGUUUU-CC-CCUAACUGCGUUUUCAUAUCUGAUCCAUAUUUCCCAAC
((((((....------------((-(((((((.....))))).(((....)))))))((.(((((..-..-...))))).)).........))))))............ ( -21.30)
>DroSim_CAF1 210476 95 + 1
GGAUUACCUA------------GC-UAGGGAAUAAUCUUCCCAUUCAAAUGGAUGGCACACAGUUUU-CCCCCUAACUGUGUUGUCAUAUCUGAUCCAUAUUUCCCAAC
((((((....------------..-..(((((.....)))))..........(((((((((((((..-......))))))).))))))...))))))............ ( -27.90)
>DroEre_CAF1 215645 106 + 1
GAAUU---UAGCUGAAACCCAAACUAAAGGCAAAAUCUUCUUAUUCAAAUGGGUGGCACACAGUUUUUCGCCCUAACAGAGUUUUCCUAUCUGAUCCAUAUUUCCCAAG
((((.---.((..((...((........)).....))..)).))))..(((((((((............)))....((((.........)))))))))).......... ( -13.90)
>DroYak_CAF1 213404 109 + 1
GGAUUGCCUGGCAAUAAGUUAAAGUUAGCUGAAAAUCCUCUCAUUCAGAUGGAUGGCACACAGUUUUCUUUCCUAACUGAGCUCUCAUAUCUGAUCCAAAUUUCCCAAC
(((((...(((((((........))).))))..)))))......(((((((((.(((...(((((.........))))).))).)).)))))))............... ( -21.90)
>consensus
GGAUUACCUA_____AA_____AC_UAGGGAAAAAUCUUCCCAUUCAAAUGGAUGGCACACAGUUUU_CCCCCUAACUGAGUUUUCAUAUCUGAUCCAUAUUUCCCAAC
...........................(((((........((((((....)))))).((.(((((.........))))).))...................)))))... ( -9.64 = -10.36 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:08 2006